Factsheet for Solyc07g052980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067358	Potato	extracellular	97.64	97.64
KRH22496	Soybean	extracellular	75.68	77.24
VIT_12s0134g00160.t01	Wine grape	extracellular	76.35	76.35
KRH26853	Soybean	vacuole	74.66	74.66
KRH56088	Soybean	vacuole	73.99	73.74
KRH25426	Soybean	extracellular	73.65	73.15
AT4G03210.1	Thale cress	extracellular	67.91	69.31
CDY21985	Canola	extracellular	67.57	68.97
CDY22110	Canola	extracellular	67.23	68.62
CDY53771	Canola	extracellular	66.89	68.28
Bra000840.1-P	Field mustard	extracellular	66.55	67.93
CDX90896	Canola	extracellular	66.22	67.59
GSMUA_Achr9P29980_001	Banana	extracellular, vacuole	60.14	66.67
GSMUA_Achr6P19100_001	Banana	extracellular, vacuole	58.45	64.07
Bra034193.1-P	Field mustard	cytosol	66.89	57.56
EER91282	Sorghum	extracellular, vacuole	55.74	51.24
Solyc03g098430.2.1	Tomato	extracellular	48.65	50.88
EES11493	Sorghum	extracellular, vacuole	55.74	50.77
Solyc02g091920.2.1	Tomato	nucleus	49.32	49.49
Solyc12g098610.1.1	Tomato	nucleus	43.24	49.04
Solyc03g093080.2.1	Tomato	extracellular	47.3	48.95
Solyc03g093120.2.1	Tomato	extracellular	47.3	48.95
Solyc03g093130.2.1	Tomato	extracellular	47.3	48.78
Zm00001d002193_P003	Maize	extracellular, vacuole	55.41	48.66
Solyc11g040140.1.1	Tomato	extracellular	48.99	48.33
Solyc03g093110.2.1	Tomato	extracellular	46.62	48.08
Solyc09g092520.2.1	Tomato	nucleus	44.26	47.46
Solyc07g009380.2.1	Tomato	extracellular, nucleus	43.58	46.91
Solyc07g056000.2.1	Tomato	extracellular, nucleus	44.93	46.34
Solyc07g055990.2.1	Tomato	nucleus	45.27	46.21
Solyc07g006870.2.1	Tomato	extracellular, vacuole	43.92	46.1
Solyc11g065600.1.1	Tomato	nucleus	45.61	46.08
Solyc12g017240.1.1	Tomato	extracellular	44.93	46.02
Solyc07g006860.2.1	Tomato	extracellular	44.26	45.96
Solyc01g099630.2.1	Tomato	extracellular	45.27	45.27
Solyc10g005350.2.1	Tomato	extracellular	43.24	44.44
Solyc03g031800.2.1	Tomato	extracellular	44.26	44.41
Solyc05g046290.2.1	Tomato	extracellular	42.91	44.1
Solyc02g080160.2.1	Tomato	extracellular	44.26	43.96
Solyc12g007270.1.1	Tomato	extracellular	41.89	42.32
Solyc12g011030.1.1	Tomato	nucleus	39.19	41.88
Solyc12g007260.1.1	Tomato	extracellular	41.22	41.78
Solyc01g106650.2.1	Tomato	extracellular, vacuole	40.2	40.61
Solyc12g007250.1.1	Tomato	extracellular	39.86	40.55
Solyc07g006850.1.1	Tomato	golgi	44.59	38.6

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:Beta_glucanase	InterPro:ConA-like_dom_sf	InterPro:GH16	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411
GO:GO:0016043	GO:GO:0016740	GO:GO:0016757	GO:GO:0016762	GO:GO:0016787	GO:GO:0016798
GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757	UniProt:K4CFJ6
PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	PRINTS:PR00737	PFscan:PS51762	PANTHER:PTHR31062
PANTHER:PTHR31062:SF11	SUPFAM:SSF49899	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc07g052980.2	EnsemblPlants:Solyc07g052980.2.1	UniParc:UPI000276BC16
InterPro:XET_C	InterPro:XTH	:	:	:	:

Description

Xyloglucan endotransglucosylase/hydrolase protein 9 [Source:Projected from Arabidopsis thaliana (AT4G03210) UniProtKB/Swiss-Prot;Acc:Q8LDW9]

Coordinates

chr7:+:61401256..61403204

Molecular Weight (calculated)

33935.8 Da

IEP (calculated)

6.387

GRAVY (calculated)

-0.434

Length

296 amino acids

Sequence
(BLAST)

001: MVSFNWVFSS FVMLFMVGLV SSAKFEELYQ PSWAFDHLTT EGEILRMKLD HLSGTGFQSK SKYMFGKVTV QIKLVEGDSA GTVTAFYMSS DGPTHNEFDF
101: EFLGNTTGEP YTVQTNVYVN GVGNREQRLK LWFDPSKDFH SYSIMWNQRQ VVFLVDETPV RVHSNLEHRG IPYPKDQPMG VYSSIWNADD WATQGGLVKT
201: DWSHAPFVAS YKGFEINGCE CPATVAAAEN TRRCSSNGQK KYWWDEPVMS ELNLHQSHQL IWVRANHMVY DYCTDSARFP VAPVECQHHQ HKTNHN

Best Arabidopsis Sequence Match ( AT4G03210.1 )
(BLAST)

001: MVGMDLFKCV MMIMVLVVSC GEAVSGAKFD ELYRSSWAMD HCVNEGEVTK LKLDNYSGAG FESRSKYLFG KVSIQIKLVE GDSAGTVTAF YMSSDGPNHN
101: EFDFEFLGNT TGEPYIVQTN IYVNGVGNRE QRLNLWFDPT TEFHTYSILW SKRSVVFMVD ETPIRVQKNL EEKGIPFAKD QAMGVYSSIW NADDWATQGG
201: LVKTDWSHAP FVASYKEFQI DACEIPTTTD LSKCNGDQKF WWDEPTVSEL SLHQNHQLIW VRANHMIYDY CFDATRFPVT PLECQHHRHL

Arabidopsis Description

XTH9Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:A0A178V222]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.