Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 23041469 endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
23041469
doi
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94750 | Soybean | endoplasmic reticulum | 82.32 | 96.27 |
| KRH06776 | Soybean | endoplasmic reticulum | 74.2 | 86.78 |
| KRH70105 | Soybean | nucleus | 75.94 | 84.79 |
| GSMUA_Achr8P34300_001 | Banana | cytosol | 64.64 | 81.39 |
| KRG94748 | Soybean | extracellular, vacuole | 60.58 | 80.69 |
| PGSC0003DMT400005591 | Potato | extracellular | 64.35 | 75.0 |
| TraesCSU01G175000.1 | Wheat | vacuole | 63.77 | 74.83 |
| TraesCS4D01G142800.1 | Wheat | extracellular | 63.77 | 74.83 |
| TraesCS4A01G172600.1 | Wheat | unclear | 63.77 | 74.83 |
| Solyc11g040140.1.1 | Tomato | extracellular | 64.64 | 74.33 |
| AT2G06850.1 | Thale cress | extracellular | 63.77 | 74.32 |
| Bra013164.1-P | Field mustard | extracellular | 63.48 | 74.24 |
| CDX93096 | Canola | extracellular | 63.48 | 74.24 |
| Zm00001d052651_P001 | Maize | extracellular | 63.77 | 74.07 |
| CDY69237 | Canola | extracellular | 63.19 | 73.9 |
| Os11t0539200-01 | Rice | extracellular | 62.61 | 73.22 |
| HORVU4Hr1G028720.1 | Barley | extracellular, vacuole | 63.19 | 72.19 |
| OQU83588 | Sorghum | extracellular | 62.61 | 71.29 |
| KRH42721 | Soybean | extracellular, nucleus | 42.9 | 52.3 |
| KRH31558 | Soybean | nucleus | 41.74 | 52.17 |
| KRG97361 | Soybean | nucleus | 41.74 | 51.61 |
| KRH58823 | Soybean | extracellular, nucleus | 42.32 | 51.59 |
| KRH19002 | Soybean | extracellular | 42.61 | 51.58 |
| KRH19136 | Soybean | nucleus | 41.74 | 50.88 |
| KRH37378 | Soybean | nucleus | 38.55 | 50.0 |
| KRH02894 | Soybean | endoplasmic reticulum, extracellular | 42.32 | 50.0 |
| KRH02892 | Soybean | extracellular | 41.45 | 49.83 |
| KRH02893 | Soybean | extracellular | 40.87 | 49.47 |
| KRH19005 | Soybean | vacuole | 40.87 | 49.47 |
| KRH02890 | Soybean | extracellular | 40.87 | 49.47 |
| KRH25426 | Soybean | extracellular | 42.61 | 49.33 |
| KRH22496 | Soybean | extracellular | 41.45 | 49.31 |
| KRH77174 | Soybean | extracellular | 42.03 | 48.99 |
| KRH56088 | Soybean | vacuole | 42.03 | 48.82 |
| KRH02895 | Soybean | cytosol | 41.45 | 48.81 |
| KRH58172 | Soybean | extracellular, vacuole | 41.16 | 48.8 |
| KRH19003 | Soybean | extracellular | 40.29 | 48.43 |
| KRH26853 | Soybean | vacuole | 41.45 | 48.31 |
| KRH04364 | Soybean | extracellular | 40.87 | 48.29 |
| KRH41530 | Soybean | nucleus | 38.84 | 47.35 |
| KRH28311 | Soybean | extracellular, vacuole | 40.58 | 47.14 |
| KRH02889 | Soybean | extracellular | 39.42 | 46.74 |
| KRH19006 | Soybean | vacuole | 39.13 | 46.08 |
| KRG91233 | Soybean | extracellular | 39.71 | 45.51 |
| KRH35587 | Soybean | extracellular | 39.13 | 44.7 |
| KRH42944 | Soybean | extracellular | 37.97 | 44.56 |
| KRH39331 | Soybean | nucleus | 37.1 | 44.29 |
| KRH76320 | Soybean | nucleus | 36.81 | 43.94 |
| KRH59064 | Soybean | extracellular | 37.68 | 43.92 |
| KRG98913 | Soybean | vacuole | 36.23 | 43.4 |
| KRH35625 | Soybean | vacuole | 37.1 | 43.24 |
| KRG91154 | Soybean | extracellular | 36.81 | 42.91 |
| KRH12375 | Soybean | extracellular | 39.13 | 42.72 |
| KRH14468 | Soybean | extracellular | 34.78 | 41.67 |
| GSMUA_Achr7P02620_001 | Banana | endoplasmic reticulum, extracellular | 53.33 | 41.63 |
| KRH73676 | Soybean | extracellular | 33.91 | 41.34 |
Protein Annotations
| Gene3D:2.60.120.200 | MapMan:50.2.4 | UniProt:A0A0R0FLF0 | EMBL:ACUP02009871 | InterPro:ConA-like_dom_sf | InterPro:GH16 |
| InterPro:GH16_AS | EnsemblPlantsGene:GLYMA_16G045000 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005975 | GO:GO:0006073 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010411 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016762 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030312 | GO:GO:0042546 | GO:GO:0048046 | GO:GO:0071555 |
| InterPro:IPR000757 | EnsemblPlants:KRH06775 | ProteinID:KRH06775 | ProteinID:KRH06775.1 | PFAM:PF00722 | PFAM:PF06955 |
| PIRSF:PIRSF005604 | ScanProsite:PS01034 | PFscan:PS51762 | PANTHER:PTHR31062 | PANTHER:PTHR31062:SF97 | SUPFAM:SSF49899 |
| UniParc:UPI0006ED563F | InterPro:XET_C | InterPro:XTH | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr16:-:4272035..4274373
Molecular Weight (calculated)
40457.9 Da
IEP (calculated)
9.581
GRAVY (calculated)
-0.611
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MYLHKFKLYL KGYRVERERE RNKGFRAGSS AYKYPALATR FHKLRHTEKM GSSSSMWTVC VILASLASAA LCANPRRPVD VQFGRNYVPT WAFDHIKYFN
101: GGSDIQLHLD KYTGTGFQSK GSYLFGHFSM YIKMVPGDSA GTVTAFYLSS QNAEHDEIDF EFLGNRTGQP YILQTNVFTG GKGDREQRIY LWFDPTKEYH
201: RYSILWNLYQ IVFFVDEVPI RVFKNSKDLG VKFPFDQPMK IYNSLWNADD WATRGGLEKT DWSKAPFIAA YKGFHIDGCE ASVNAKFCDT QGKRWWDQPE
301: FRDLDAAQWR RLRWVRQKYT IYNYCTDTKR YPHISPPECK RDRDI
101: GGSDIQLHLD KYTGTGFQSK GSYLFGHFSM YIKMVPGDSA GTVTAFYLSS QNAEHDEIDF EFLGNRTGQP YILQTNVFTG GKGDREQRIY LWFDPTKEYH
201: RYSILWNLYQ IVFFVDEVPI RVFKNSKDLG VKFPFDQPMK IYNSLWNADD WATRGGLEKT DWSKAPFIAA YKGFHIDGCE ASVNAKFCDT QGKRWWDQPE
301: FRDLDAAQWR RLRWVRQKYT IYNYCTDTKR YPHISPPECK RDRDI
001: MGRLSSTLCL TFLILATVAF GVPPKKSINV PFGRNYFPTW AFDHIKYLNG GSEVHLVLDK YTGTGFQSKG SYLFGHFSMH IKMVAGDSAG TVTAFYLSSQ
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI
101: NSEHDEIDFE FLGNRTGQPY ILQTNVFTGG AGNREQRINL WFDPSKDYHS YSVLWNMYQI VFFVDDVPIR VFKNSKDVGV KFPFNQPMKI YSSLWNADDW
201: ATRGGLEKTN WEKAPFVASY RGFHVDGCEA SVNAKFCETQ GKRWWDQKEF QDLDANQYKR LKWVRKRYTI YNYCTDRVRF PVPPPECRRD RDI
Arabidopsis Description
XTH5Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:Q67Z90]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.