Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0028g02240.t01 | |
| VIT_18s0001g09830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G12630.1 | VIT_12s0028g02240.t01 | AT2G42580.1 | 19000166 |
| AT3G12630.1 | VIT_18s0001g09830.t01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52666 | Canola | nucleus | 59.3 | 65.81 |
| VIT_18s0001g01260.t01 | Wine grape | nucleus | 25.58 | 65.67 |
| VIT_18s0001g00430.t01 | Wine grape | nucleus | 25.58 | 65.67 |
| Bra038739.1-P | Field mustard | nucleus | 59.3 | 65.38 |
| CDY50536 | Canola | nucleus | 59.3 | 65.38 |
| CDY08419 | Canola | nucleus | 59.3 | 64.15 |
| KRH13914 | Soybean | cytosol, nucleus, plastid | 59.88 | 63.98 |
| AT3G12630.1 | Thale cress | nucleus | 59.3 | 63.75 |
| Bra034748.1-P | Field mustard | nucleus | 58.72 | 63.52 |
| CDY67538 | Canola | nucleus | 58.72 | 63.52 |
| CDY00788 | Canola | cytosol, nucleus, plastid | 56.98 | 63.23 |
| Bra001461.1-P | Field mustard | nucleus | 58.14 | 62.89 |
| CDX73811 | Canola | nucleus | 58.14 | 62.89 |
| KRH43492 | Soybean | cytosol, nucleus, plastid | 59.88 | 62.8 |
| GSMUA_Achr3P11070_001 | Banana | nucleus | 55.23 | 61.29 |
| Solyc01g086960.2.1 | Tomato | nucleus | 63.37 | 57.98 |
| PGSC0003DMT400017570 | Potato | nucleus | 62.79 | 57.75 |
| GSMUA_Achr9P19860_001 | Banana | nucleus | 50.0 | 55.48 |
| TraesCS5A01G263500.1 | Wheat | cytosol | 46.51 | 51.95 |
| Os09t0486500-02 | Rice | nucleus | 48.84 | 51.22 |
| VIT_06s0004g01790.t01 | Wine grape | nucleus | 41.86 | 50.7 |
| TraesCS5B01G262900.1 | Wheat | nucleus | 47.09 | 50.0 |
| Zm00001d020926_P001 | Maize | cytosol, nucleus, plastid | 47.09 | 49.69 |
| TraesCS5D01G271100.1 | Wheat | nucleus | 47.09 | 49.09 |
| Zm00001d006016_P001 | Maize | nucleus | 45.35 | 48.45 |
| OQU89687 | Sorghum | nucleus | 48.26 | 48.26 |
| HORVU7Hr1G050270.1 | Barley | nucleus | 44.77 | 47.83 |
| TraesCS7A01G245100.1 | Wheat | nucleus | 47.09 | 47.37 |
| Zm00001d031423_P001 | Maize | cytosol, nucleus, plastid | 48.26 | 47.16 |
| TraesCS7B01G146400.1 | Wheat | nucleus | 46.51 | 46.78 |
| TraesCS7D01G243700.1 | Wheat | nucleus | 46.51 | 46.51 |
| Os08t0504700-01 | Rice | cytosol, nucleus, plastid | 45.93 | 46.47 |
| OQU80949 | Sorghum | cytosol, nucleus, plastid | 47.09 | 46.02 |
| VIT_06s0004g01820.t01 | Wine grape | nucleus | 41.28 | 41.28 |
| VIT_08s0007g07950.t01 | Wine grape | cytosol, nucleus, plastid | 40.12 | 40.12 |
| VIT_08s0007g03530.t01 | Wine grape | nucleus | 36.63 | 39.13 |
| VIT_02s0025g05080.t01 | Wine grape | cytosol | 22.67 | 39.0 |
| VIT_13s0064g01210.t01 | Wine grape | nucleus | 38.37 | 38.37 |
| VIT_02s0025g05050.t01 | Wine grape | nucleus | 34.88 | 34.88 |
| VIT_16s0022g01980.t01 | Wine grape | nucleus | 30.81 | 34.87 |
| HORVU5Hr1G072920.1 | Barley | plastid | 47.09 | 32.53 |
| VIT_01s0011g02290.t01 | Wine grape | nucleus | 27.91 | 31.17 |
| VIT_16s0022g01680.t01 | Wine grape | nucleus | 26.16 | 18.83 |
Protein Annotations
| EntrezGene:100852428 | wikigene:100852428 | MapMan:35.1 | Gene3D:4.10.1110.10 | InterPro:AN1-like_Znf | ProteinID:CCB49489 |
| ProteinID:CCB49489.1 | UniProt:F6HBB0 | EMBL:FN595509 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR000058 | InterPro:IPR002653 | InterPro:IPR035896 |
| EntrezGene:LOC100852428 | wikigene:LOC100852428 | PFAM:PF01428 | PFAM:PF01754 | PFscan:PS51036 | PFscan:PS51039 |
| PANTHER:PTHR10634 | PANTHER:PTHR10634:SF22 | SMART:SM00154 | SMART:SM00259 | SUPFAM:SSF118310 | SUPFAM:SSF57716 |
| TIGR:TC57194 | UniParc:UPI0001CAC89A | ArrayExpress:VIT_13s0064g01220 | EnsemblPlantsGene:VIT_13s0064g01220 | EnsemblPlants:VIT_13s0064g01220.t01 | RefSeq:XP_003633555 |
| RefSeq:XP_003633555.1 | InterPro:Znf_A20 | InterPro:Znf_AN1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr13:+:23101492..23102332
Molecular Weight (calculated)
18360.6 Da
IEP (calculated)
8.717
GRAVY (calculated)
-0.486
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQKTEKEET EFKVPETLAL CVNNCGFTGN PATNNMCQKC FSASASAAAA AAAGALKSSH KVSGGAADAR SSSARSPERM DSLAETSLDR TKDAASAAAV
101: EEVGKVKREV NRCSGCRRKV GLTGFRCRCG DLFCAEHRYT DRHECSYDYK TAGREAIARE NPVVKAAKIV RV
101: EEVGKVKREV NRCSGCRRKV GLTGFRCRCG DLFCAEHRYT DRHECSYDYK TAGREAIARE NPVVKAAKIV RV
001: MAQRTEKEET EFKVLETLTT TTTTLCTNNC GVTANPATNN MCQKCFNASL VSAAAGVVES GSILKRSARS VNLRSSPAKV VIRPREIDAV KKRDQQIVNR
101: CSGCRKKVGL TGFRCRCGEL FCSEHRYSDR HDCSYDYKTA GREAIARENP VVKAAKMVKV
101: CSGCRKKVGL TGFRCRCGEL FCSEHRYSDR HDCSYDYKTA GREAIARENP VVKAAKMVKV
Arabidopsis Description
SAP5Zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHJ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.