Factsheet for VIT_02s0025g05050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g05080.t01	Wine grape	cytosol	48.26	83.0
KRH57322	Soybean	cytosol, extracellular, nucleus	45.35	63.41
KRH04053	Soybean	cytosol	47.09	62.79
CDY03251	Canola	nucleus	48.84	59.57
AT1G12440.2	Thale cress	nucleus, plastid	58.14	59.52
Bra036643.1-P	Field mustard	nucleus	37.21	57.66
CDY39818	Canola	nucleus	37.21	57.66
AT4G12040.1	Thale cress	cytosol, nucleus, plastid	55.23	54.29
VIT_08s0007g03530.t01	Wine grape	nucleus	48.84	52.17
AT4G22820.2	Thale cress	cytosol, nucleus, plastid	51.16	50.0
VIT_18s0001g00430.t01	Wine grape	nucleus	19.19	49.25
VIT_18s0001g01260.t01	Wine grape	nucleus	19.19	49.25
PGSC0003DMT400010084	Potato	cytosol	47.09	48.8
Solyc08g079700.1.1	Tomato	cytosol	46.51	48.48
VIT_06s0004g01820.t01	Wine grape	nucleus	43.02	43.02
VIT_08s0007g07950.t01	Wine grape	cytosol, nucleus, plastid	43.02	43.02
VIT_01s0011g02290.t01	Wine grape	nucleus	37.79	42.21
VIT_16s0022g01980.t01	Wine grape	nucleus	36.63	41.45
VIT_13s0064g01210.t01	Wine grape	nucleus	40.12	40.12
VIT_13s0064g01220.t01	Wine grape	nucleus	34.88	34.88
VIT_06s0004g01790.t01	Wine grape	nucleus	25.0	30.28
VIT_16s0022g01680.t01	Wine grape	nucleus	37.21	26.78

Protein Annotations

EntrezGene:100259845	wikigene:100259845	EntrezGene:100852756	wikigene:100852756	MapMan:35.1	Gene3D:4.10.1110.10
InterPro:AN1-like_Znf	ProteinID:CCB58433	ProteinID:CCB58433.1	UniProt:F6HUL0	EMBL:FN596251	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000058
InterPro:IPR002653	InterPro:IPR035896	EntrezGene:LOC100259845	wikigene:LOC100259845	EntrezGene:LOC100852756	wikigene:LOC100852756
PFAM:PF01428	PFAM:PF01754	PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF38
SMART:SM00154	SMART:SM00259	SUPFAM:SSF118310	SUPFAM:SSF57716	TIGR:TC51753	UniParc:UPI0001982BB0
ArrayExpress:VIT_02s0025g05050	EnsemblPlantsGene:VIT_02s0025g05050	EnsemblPlants:VIT_02s0025g05050.t01	unigene:Vvi.11476	RefSeq:XP_002281372	RefSeq:XP_002281372.1
RefSeq:XP_003631395	RefSeq:XP_003631395.1	RefSeq:XP_010661702.1	RefSeq:XP_010661707.1	InterPro:Znf_A20	InterPro:Znf_AN1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:4509488..4511103

Molecular Weight (calculated)

18461.8 Da

IEP (calculated)

8.494

GRAVY (calculated)

-0.494

Length

172 amino acids

Sequence
(BLAST)

001: MGSENKTNDE TSFQPSEPIL CANGCGFFGA AATMNLCSKC YRDLRIKEEQ QASAKAAMNM SFNPKLLQEN RTSSFSFLDT AGGSSSSSSC SFTFGNVGVG
101: GGDKSEPKVP NRCMSCNKKV GLTGFRCKCG STFCGAHRYP EKHECTFDFK ASGRDAIAKA NPVVKADKLD RL

Best Arabidopsis Sequence Match ( AT1G12440.2 )
(BLAST)

001: MGSEQNDSTS FSPSEPKLCV KGCGFFGSPS NMNLCSKCYR DIRATEEQTA SAKAAVEKSL NPNKPKTQPQ QSQEITQGVL GSGSSSSSTR GGDSAAAPLD
101: PPKSTATRCL SCNKKVGVTG FKCRCGSTFC GTHRYPESHE CQFDFKGVAR EAIAKANPVV KADKVDRI

Arabidopsis Description

SAP1Zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.