Factsheet for VIT_06s0004g01820.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g07950.t01	Wine grape	cytosol, nucleus, plastid	79.65	79.65
KRH29694	Soybean	cytosol	80.23	78.86
KRH10187	Soybean	nucleus	77.91	77.91
KRH24692	Soybean	cytosol	78.49	77.59
KRH23151	Soybean	nucleus	76.74	76.74
VIT_13s0064g01210.t01	Wine grape	nucleus	68.6	68.6
Bra014276.1-P	Field mustard	cytosol	30.23	65.0
CDY25219	Canola	cytosol, nucleus, plastid	61.05	62.5
Bra018900.1-P	Field mustard	cytosol, nucleus, plastid	60.47	61.9
CDY22831	Canola	cytosol, nucleus, plastid	60.47	61.9
AT1G51200.2	Thale cress	cytosol, nucleus, plastid	62.21	61.85
CDY60839	Canola	nucleus, plastid	58.14	60.98
Bra014278.1-P	Field mustard	nucleus	61.63	59.55
VIT_18s0001g01260.t01	Wine grape	nucleus	20.35	52.24
VIT_18s0001g00430.t01	Wine grape	nucleus	20.35	52.24
VIT_08s0007g03530.t01	Wine grape	nucleus	45.93	49.07
VIT_02s0025g05080.t01	Wine grape	cytosol	26.74	46.0
VIT_02s0025g05050.t01	Wine grape	nucleus	43.02	43.02
VIT_13s0064g01220.t01	Wine grape	nucleus	41.28	41.28
VIT_16s0022g01980.t01	Wine grape	nucleus	33.14	37.5
VIT_01s0011g02290.t01	Wine grape	nucleus	31.98	35.71
VIT_06s0004g01790.t01	Wine grape	nucleus	27.91	33.8
VIT_16s0022g01680.t01	Wine grape	nucleus	30.81	22.18

Protein Annotations

EntrezGene:100267237	wikigene:100267237	MapMan:35.1	Gene3D:4.10.1110.10	InterPro:AN1-like_Znf	ProteinID:CCB43727
ProteinID:CCB43727.1	UniProt:F6GU85	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896
EntrezGene:LOC100267237	wikigene:LOC100267237	PFAM:PF01428	PFAM:PF01754	PFscan:PS51036	PFscan:PS51039
PANTHER:PTHR10634	PANTHER:PTHR10634:SF63	SMART:SM00154	SMART:SM00259	SUPFAM:SSF118310	SUPFAM:SSF57716
TIGR:TC52443	UniParc:UPI000198369B	ArrayExpress:VIT_06s0004g01820	EnsemblPlantsGene:VIT_06s0004g01820	EnsemblPlants:VIT_06s0004g01820.t01	RefSeq:XP_002285528
RefSeq:XP_002285528.1	RefSeq:XP_002285530	RefSeq:XP_002285530.1	InterPro:Znf_A20	InterPro:Znf_AN1	SEG:seg

Description

No Description!

Coordinates

chr6:-:2249293..2251950

Molecular Weight (calculated)

18503.9 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.500

Length

172 amino acids

Sequence
(BLAST)

001: MDHDETGCQA HPEGPILCIN NCGFFGSPAT MNMCSKCHKD MMLKQEQAKL AASSIDSIVN GSSSNNGKEP AIASTVDVQV DAKEPKIISV QSSFSFGSEG
101: SGEAKPKEGP NRCSTCKKRV GLTGFNCRCG HLFCATHRYS DKHDCPFDYR TAARDAIAKA NPVVKAEKLD KI

Best Arabidopsis Sequence Match ( AT1G51200.2 )
(BLAST)

001: MDHDKTGCQS PPEGPKLCTN NCGFFGSAAT MNMCSKCHKD MLFQQEQGAK FASAVSGTSS SSNIIKETFT AALVDIETKS VEPMTVSVQP SSVQVVAEVV
101: APEEAAKPKG PSRCTTCNKR VGLTGFKCRC GSLFCGTHRY ADVHDCSFNY HAAAQEAIAK ANPVVKAEKL DKI

Arabidopsis Description

SAP2Zinc finger A20 and AN1 domain-containing stress-associated protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0X0]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.