Factsheet for VIT_16s0022g01980.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g02290.t01	Wine grape	nucleus	74.34	73.38
VIT_16s0022g01680.t01	Wine grape	nucleus	73.03	46.44
VIT_18s0001g01260.t01	Wine grape	nucleus	19.08	43.28
VIT_18s0001g00430.t01	Wine grape	nucleus	19.08	43.28
CDX90265	Canola	cytosol	36.18	42.31
CDY65025	Canola	cytosol	36.18	42.31
Bra010753.1-P	Field mustard	cytosol	35.53	41.54
AT4G14225.1	Thale cress	cytosol, mitochondrion, plastid	33.55	40.8
GSMUA_Achr9P17970_001	Banana	cytosol, mitochondrion, nucleus	36.84	39.72
GSMUA_Achr9P07600_001	Banana	nucleus	36.18	39.01
VIT_02s0025g05080.t01	Wine grape	cytosol	24.34	37.0
VIT_08s0007g03530.t01	Wine grape	nucleus	38.82	36.65
VIT_02s0025g05050.t01	Wine grape	nucleus	41.45	36.63
TraesCS2B01G153100.1	Wheat	peroxisome	36.84	36.36
VIT_13s0064g01210.t01	Wine grape	nucleus	40.79	36.05
TraesCS2A01G130400.1	Wheat	peroxisome	36.18	35.71
TraesCS2A01G131000.1	Wheat	cytosol, mitochondrion, nucleus	32.24	35.25
TraesCS2B01G153200.1	Wheat	peroxisome	35.53	34.84
TraesCS2B01G153000.1	Wheat	nucleus	36.18	34.59
TraesCS2B01G153300.1	Wheat	peroxisome	36.18	34.38
TraesCS2D01G133000.1	Wheat	cytosol, nucleus, plastid	35.53	34.18
TraesCS2B01G235400.1	Wheat	peroxisome	30.26	33.82
TraesCS2D01G215700.1	Wheat	peroxisome	30.26	33.82
TraesCS2A01G209400.1	Wheat	peroxisome	30.26	33.82
TraesCS2D01G133100.1	Wheat	peroxisome	34.21	33.33
TraesCS2B01G277500.1	Wheat	cytosol, nucleus, peroxisome	30.26	33.33
TraesCS2A01G131200.1	Wheat	peroxisome	34.21	33.33
VIT_06s0004g01820.t01	Wine grape	nucleus	37.5	33.14
TraesCS2A01G130500.1	Wheat	peroxisome	34.87	33.12
TraesCS2D01G198000.1	Wheat	nucleus	34.87	33.12
TraesCS2B01G153400.1	Wheat	peroxisome	34.87	33.12
TraesCS2D01G133200.1	Wheat	peroxisome	34.87	33.12
TraesCS2B01G235600.1	Wheat	peroxisome	29.61	33.09
HORVU2Hr1G036250.1	Barley	nucleus	34.21	32.91
TraesCS2A01G189900.1	Wheat	nucleus	34.21	32.7
TraesCS5A01G428300.1	Wheat	nucleus	32.24	32.24
TraesCS5B01G430200.1	Wheat	nucleus	31.58	31.79
TraesCS5D01G436300.1	Wheat	plastid	31.58	31.58
TraesCS6A01G404100.1	Wheat	peroxisome	34.87	31.55
TraesCS5D01G438400.1	Wheat	nucleus	33.55	31.48
VIT_08s0007g07950.t01	Wine grape	cytosol, nucleus, plastid	35.53	31.4
TraesCS6A01G404200.1	Wheat	peroxisome	33.55	31.29
HORVU2Hr1G022940.2	Barley	cytosol, peroxisome	34.87	30.99
HORVU5Hr1G103980.1	Barley	nucleus	30.26	30.87
TraesCS5B01G432700.1	Wheat	nucleus	32.89	30.86
VIT_13s0064g01220.t01	Wine grape	nucleus	34.87	30.81
Os03t0793000-01	Rice	nucleus	34.21	30.77
TraesCS5D01G438600.1	Wheat	nucleus	32.89	30.67
TraesCS6B01G448700.1	Wheat	peroxisome	34.21	30.59
TraesCS6D01G387600.1	Wheat	peroxisome	34.21	30.59
Os07t0169500-00	Rice	cytosol, peroxisome, plastid	30.26	30.26
TraesCS5A01G430800.1	Wheat	nucleus	32.24	30.06
TraesCSU01G028600.1	Wheat	nucleus	27.63	29.37
TraesCS5A01G428400.1	Wheat	nucleus	34.21	29.21
HORVU5Hr1G104360.1	Barley	nucleus	31.58	29.09
TraesCS5B01G430300.1	Wheat	nucleus	33.55	28.81
TraesCS5D01G436400.1	Wheat	nucleus	32.89	28.09
OQU90855	Sorghum	nucleus	29.61	25.0
HORVU5Hr1G103940.1	Barley	nucleus	33.55	24.76
VIT_06s0004g01790.t01	Wine grape	nucleus	23.03	24.65
Zm00001d034389_P001	Maize	peroxisome	23.03	21.74
Os08t0436400-00	Rice	nucleus	30.92	20.98
EES13894	Sorghum	cytosol	32.89	20.0
OQU76503	Sorghum	peroxisome	22.37	19.54
EES13895	Sorghum	nucleus	32.89	19.23
OQU80520	Sorghum	cytosol	32.89	18.66
Os03t0793300-01	Rice	nucleus	12.5	8.02

Protein Annotations

EntrezGene:100265151	wikigene:100265151	MapMan:35.1	Gene3D:4.10.1110.10	InterPro:AN1-like_Znf	ProteinID:CBI24503
ProteinID:CBI24503.3	ncoils:Coil	UniProt:D7T1X3	EMBL:FN595506	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000058	InterPro:IPR002653
InterPro:IPR035896	EntrezGene:LOC100265151	wikigene:LOC100265151	PFAM:PF01428	PFAM:PF01754	PFscan:PS51036
PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF65	SMART:SM00154	SMART:SM00259	SUPFAM:SSF118310
SUPFAM:SSF57716	UniParc:UPI00015CBBFC	ArrayExpress:VIT_16s0022g01980	EnsemblPlantsGene:VIT_16s0022g01980	EnsemblPlants:VIT_16s0022g01980.t01	RefSeq:XP_002269276
RefSeq:XP_002269276.1	InterPro:Znf_A20	InterPro:Znf_AN1	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:-:14299091..14299549

Molecular Weight (calculated)

16851.4 Da

IEP (calculated)

8.562

GRAVY (calculated)

-0.558

Length

152 amino acids

Sequence
(BLAST)

001: MDPPLCVNGC GFFGTPATQN LCSKCYKDFL KEEEEAAKAK TKSMEKAMGS TVASTSSVDD VVTSMTQLSL SSENTKKTIS DDSSTKKKVE RCETCKKKVG
101: IIGFKCRCGS MFCAEHRLPE KHECSFDYKT MGREILKKQI PLIKPDKLEG RV

Best Arabidopsis Sequence Match ( AT4G12040.1 )
(BLAST)

001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI

Arabidopsis Description

SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.