Factsheet for VIT_16s0022g01680.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g02290.t01	Wine grape	nucleus	56.9	88.31
VIT_16s0022g01980.t01	Wine grape	nucleus	46.44	73.03
VIT_18s0001g01260.t01	Wine grape	nucleus	12.97	46.27
VIT_18s0001g00430.t01	Wine grape	nucleus	12.97	46.27
AT4G14225.1	Thale cress	cytosol, mitochondrion, plastid	21.34	40.8
CDX90265	Canola	cytosol	21.76	40.0
CDY65025	Canola	cytosol	21.76	40.0
Bra010753.1-P	Field mustard	cytosol	21.34	39.23
GSMUA_Achr9P17970_001	Banana	cytosol, mitochondrion, nucleus	22.59	38.3
GSMUA_Achr9P07600_001	Banana	nucleus	22.59	38.3
VIT_02s0025g05080.t01	Wine grape	cytosol	15.9	38.0
VIT_02s0025g05050.t01	Wine grape	nucleus	26.78	37.21
VIT_08s0007g03530.t01	Wine grape	nucleus	24.69	36.65
TraesCS2B01G235400.1	Wheat	peroxisome	19.25	33.82
TraesCS2A01G209400.1	Wheat	peroxisome	19.25	33.82
TraesCS2B01G153100.1	Wheat	peroxisome	21.76	33.77
TraesCS2B01G277500.1	Wheat	cytosol, nucleus, peroxisome	19.25	33.33
TraesCS2A01G130400.1	Wheat	peroxisome	21.34	33.12
TraesCS2D01G215700.1	Wheat	peroxisome	18.83	33.09
TraesCS2B01G235600.1	Wheat	peroxisome	18.83	33.09
TraesCS2A01G131000.1	Wheat	cytosol, mitochondrion, nucleus	18.83	32.37
TraesCS2D01G133000.1	Wheat	cytosol, nucleus, plastid	21.34	32.28
TraesCS2B01G153200.1	Wheat	peroxisome	20.92	32.26
VIT_13s0064g01210.t01	Wine grape	nucleus	23.01	31.98
TraesCS2A01G130500.1	Wheat	peroxisome	21.34	31.88
TraesCS2B01G153300.1	Wheat	peroxisome	21.34	31.88
TraesCS2B01G153400.1	Wheat	peroxisome	21.34	31.88
TraesCS2B01G153000.1	Wheat	nucleus	20.92	31.45
TraesCS2A01G131200.1	Wheat	peroxisome	20.5	31.41
TraesCS2D01G133100.1	Wheat	peroxisome	20.5	31.41
TraesCS2D01G133200.1	Wheat	peroxisome	20.92	31.25
VIT_08s0007g07950.t01	Wine grape	cytosol, nucleus, plastid	22.18	30.81
VIT_06s0004g01820.t01	Wine grape	nucleus	22.18	30.81
HORVU2Hr1G036250.1	Barley	nucleus	20.08	30.38
Os07t0169500-00	Rice	cytosol, peroxisome, plastid	19.25	30.26
TraesCS6A01G404200.1	Wheat	peroxisome	20.5	30.06
TraesCS2D01G198000.1	Wheat	nucleus	20.08	30.0
TraesCSU01G028600.1	Wheat	nucleus	17.57	29.37
HORVU2Hr1G022940.2	Barley	cytosol, peroxisome	20.92	29.24
TraesCS6A01G404100.1	Wheat	peroxisome	20.5	29.17
TraesCS5B01G430200.1	Wheat	nucleus	18.41	29.14
TraesCS5B01G432700.1	Wheat	nucleus	19.67	29.01
TraesCS5D01G438400.1	Wheat	nucleus	19.67	29.01
TraesCS5D01G436300.1	Wheat	plastid	18.41	28.95
TraesCS5A01G428300.1	Wheat	nucleus	18.41	28.95
TraesCS2A01G189900.1	Wheat	nucleus	19.25	28.93
TraesCS5D01G438600.1	Wheat	nucleus	19.67	28.83
TraesCS6D01G387600.1	Wheat	peroxisome	20.5	28.82
TraesCS5B01G430300.1	Wheat	nucleus	20.92	28.25
TraesCS6B01G448700.1	Wheat	peroxisome	20.08	28.24
TraesCS5A01G430800.1	Wheat	nucleus	19.25	28.22
HORVU5Hr1G103980.1	Barley	nucleus	17.57	28.19
TraesCS5A01G428400.1	Wheat	nucleus	20.92	28.09
Os03t0793000-01	Rice	nucleus	19.67	27.81
TraesCS5D01G436400.1	Wheat	nucleus	20.5	27.53
HORVU5Hr1G104360.1	Barley	nucleus	18.83	27.27
VIT_06s0004g01790.t01	Wine grape	nucleus	15.9	26.76
VIT_13s0064g01220.t01	Wine grape	nucleus	18.83	26.16
OQU90855	Sorghum	nucleus	18.83	25.0
HORVU5Hr1G103940.1	Barley	nucleus	20.92	24.27
Os08t0436400-00	Rice	nucleus	19.25	20.54
Zm00001d034389_P001	Maize	peroxisome	13.81	20.5
EES13895	Sorghum	nucleus	20.92	19.23
EES13894	Sorghum	cytosol	20.08	19.2
OQU80520	Sorghum	cytosol	21.34	19.03
OQU76503	Sorghum	peroxisome	13.81	18.97
Os03t0793300-01	Rice	nucleus	8.37	8.44

Protein Annotations

EntrezGene:100265156	wikigene:100265156	MapMan:35.1	Gene3D:4.10.1110.10	InterPro:AN1-like_Znf	ProteinID:CCB49271
ProteinID:CCB49271.1	UniProt:F6HAL4	EMBL:FN595506	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896
EntrezGene:LOC100265156	wikigene:LOC100265156	PFAM:PF01428	PFAM:PF01754	PFscan:PS51036	PFscan:PS51039
PANTHER:PTHR10634	PANTHER:PTHR10634:SF65	SMART:SM00154	SMART:SM00259	SUPFAM:SSF118310	SUPFAM:SSF57716
UniParc:UPI0002108757	ArrayExpress:VIT_16s0022g01680	EnsemblPlantsGene:VIT_16s0022g01680	EnsemblPlants:VIT_16s0022g01680.t01	RefSeq:XP_002267954	RefSeq:XP_002267954.1
InterPro:Znf_A20	InterPro:Znf_AN1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:13772824..13774725

Molecular Weight (calculated)

26462.8 Da

IEP (calculated)

8.910

GRAVY (calculated)

-0.772

Length

239 amino acids

Sequence
(BLAST)

001: MEDPILCANG CGFFGTTATR NLCSKCYRDF LKEEEESTKT KVMSMKKAMG PRVESTSSLD DVATSMAQLS LSLDNTKKTS NGDPSTKMKS EQCEMCKKKM
101: GIIGFKCRCG SMFCGKHRLP EKHECNFDYK AMGREILRKQ NPSLKPEKLP GSNTPKEKEK NSESSANKRK PATRNLCSKC YGDYLKEEGE SAKAKAMSME
201: KAMGPRVEST SSLDYVVTSM AQLSLSSENT NKVINGDLL

Best Arabidopsis Sequence Match ( AT1G12440.1 )
(BLAST)

001: MGSEQNDSTS FSPSEPKLCV KGCGFFGSPS NMNLCSKCYR DIRATEEQTA SAKAAVEKSL NPNKPKTQPQ QSQEITQGVL GSGSSSSSTR GGDSAAAPLD
101: PPKSTATRCL SCNKKVGVTG FKCRCGSTFC GTHRYPESHE CQFDFKGVAR EAIAKANPVV KADKVDRI

Arabidopsis Description

SAP1Zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.