CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12630.1	CDY42827	AT2G42580.1	19000166
AT3G12630.1	CDY51514	AT2G42580.1	19000166
AT3G12630.1	CDY55390	AT2G42580.1	19000166
AT3G12630.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038739.1-P	Field mustard	nucleus	100.0	100.0
CDY52666	Canola	nucleus	99.36	100.0
AT3G12630.1	Thale cress	nucleus	92.31	90.0
CDY08419	Canola	nucleus	91.67	89.94
CDY67538	Canola	nucleus	91.67	89.94
CDY00788	Canola	cytosol, nucleus, plastid	89.1	89.68
CDX73811	Canola	nucleus	87.18	85.53
KRH13914	Soybean	cytosol, nucleus, plastid	62.82	60.87
KRH43492	Soybean	cytosol, nucleus, plastid	62.82	59.76
VIT_13s0064g01220.t01	Wine grape	nucleus	65.38	59.3
GSMUA_Achr3P11070_001	Banana	nucleus	57.69	58.06
Solyc01g086960.2.1	Tomato	nucleus	68.59	56.91
PGSC0003DMT400017570	Potato	nucleus	67.31	56.15
GSMUA_Achr9P19860_001	Banana	nucleus	52.56	52.9
TraesCS5A01G263500.1	Wheat	cytosol	50.0	50.65
HORVU7Hr1G050270.1	Barley	nucleus	50.0	48.45
TraesCS5B01G262900.1	Wheat	nucleus	50.0	48.15
Zm00001d020926_P001	Maize	cytosol, nucleus, plastid	50.0	47.85
Zm00001d006016_P001	Maize	nucleus	49.36	47.83
TraesCS5D01G271100.1	Wheat	nucleus	50.0	47.27
Os09t0486500-02	Rice	nucleus	49.36	46.95
OQU89687	Sorghum	nucleus	51.28	46.51
TraesCS7A01G245100.1	Wheat	nucleus	50.0	45.61
TraesCS7D01G243700.1	Wheat	nucleus	50.0	45.35
TraesCS7B01G146400.1	Wheat	nucleus	49.36	45.03
Os08t0504700-01	Rice	cytosol, nucleus, plastid	47.44	43.53
OQU80949	Sorghum	cytosol, nucleus, plastid	48.08	42.61
Zm00001d031423_P001	Maize	cytosol, nucleus, plastid	47.44	42.05
CDX67537	Canola	cytosol, nucleus, plastid	36.54	38.0
CDY60839	Canola	nucleus, plastid	39.1	37.2
CDX95378	Canola	cytosol, nucleus, plastid	36.54	37.01
CDX79670	Canola	nucleus	35.26	36.42
CDY13347	Canola	nucleus	35.9	36.36
CDY25219	Canola	cytosol, nucleus, plastid	39.1	36.31
CDY22831	Canola	cytosol, nucleus, plastid	39.1	36.31
CDX84135	Canola	cytosol, nucleus, plastid	34.62	36.24
CDY26566	Canola	nucleus	35.9	36.13
CDX75051	Canola	cytosol, nucleus, plastid	37.18	35.58
CDX73602	Canola	cytosol, nucleus, plastid	35.9	34.78
CDY65025	Canola	cytosol	28.85	34.62
CDY16005	Canola	nucleus	35.26	34.59
CDX84565	Canola	cytosol, nucleus, plastid	35.26	34.38
CDY66222	Canola	cytosol, nucleus, plastid	35.9	34.36
CDX90265	Canola	cytosol	28.21	33.85
CDY04388	Canola	cytosol	14.74	33.33
CDY00455	Canola	cytosol	14.74	33.33
CDY49709	Canola	cytosol	26.92	32.06
CDY57287	Canola	cytosol	27.56	31.62
CDY39818	Canola	nucleus	22.44	31.53
HORVU5Hr1G072920.1	Barley	plastid	50.0	31.33
CDX83273	Canola	cytosol, mitochondrion, nucleus	32.69	30.72
CDY03251	Canola	nucleus	27.56	30.5
CDX92701	Canola	cytosol	26.28	30.37
CDY31184	Canola	cytosol, mitochondrion, nucleus	32.69	30.18
CDX86725	Canola	nucleus, plastid	31.41	30.06
CDX94483	Canola	plastid	31.41	30.06
CDY51557	Canola	nucleus	32.69	23.5
CDX98772	Canola	cytosol, extracellular, nucleus	32.69	17.47

Protein Annotations

MapMan:35.1	Gene3D:4.10.1110.10	GO:A0A078IKM2	UniProt:A0A078IKM2	InterPro:AN1-like_Znf	EnsemblPlants:CDY50536
ProteinID:CDY50536	ProteinID:CDY50536.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00096961001	InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896
PFAM:PF01428	PFAM:PF01754	PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF22
SMART:SM00154	SMART:SM00259	SUPFAM:SSF118310	SUPFAM:SSF57716	UniParc:UPI000254522D	InterPro:Znf_A20
InterPro:Znf_AN1	SEG:seg	:	:	:	:

Description

BnaA01g30440DBnaA01g30440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKM2]

Coordinates

chrLK032921:+:59912..60907

Molecular Weight (calculated)

17266.7 Da

IEP (calculated)

9.463

GRAVY (calculated)

-0.541

Length

156 amino acids

Sequence
(BLAST)

001: MAQRTEKEET EFKVLETLTT TTPTLCSNNC GVTANPATNN MCQKCFNASV AAAGVDSTSI LKRSARSVNL RSTPAKVVIR PREIDPVKRD QQTINRCSGC
101: RKKVGLTGFR CRCGDLFCAE HRYSDRHDCS YDYKTAGREA IARENPVVKA AKMVKV

Best Arabidopsis Sequence Match ( AT3G12630.1 )
(BLAST)

001: MAQRTEKEET EFKVLETLTT TTTTLCTNNC GVTANPATNN MCQKCFNASL VSAAAGVVES GSILKRSARS VNLRSSPAKV VIRPREIDAV KKRDQQIVNR
101: CSGCRKKVGL TGFRCRCGEL FCSEHRYSDR HDCSYDYKTA GREAIARENP VVKAAKMVKV

Arabidopsis Description

SAP5Zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.