CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86725	Canola	nucleus, plastid	96.32	96.32
Bra029435.1-P	Field mustard	plastid	97.55	90.86
AT4G12040.1	Thale cress	cytosol, nucleus, plastid	88.34	82.29
CDY26566	Canola	nucleus	60.74	63.87
CDY04388	Canola	cytosol	26.38	62.32
CDY16005	Canola	nucleus	60.74	62.26
CDY00455	Canola	cytosol	24.54	57.97
CDY03251	Canola	nucleus	49.69	57.45
CDY51557	Canola	nucleus	74.23	55.76
CDY39818	Canola	nucleus	36.81	54.05
CDX79670	Canola	nucleus	44.79	48.34
CDX67537	Canola	cytosol, nucleus, plastid	44.17	48.0
CDY13347	Canola	nucleus	44.17	46.75
CDX84565	Canola	cytosol, nucleus, plastid	44.17	45.0
CDX84135	Canola	cytosol, nucleus, plastid	41.1	44.97
CDX95378	Canola	cytosol, nucleus, plastid	42.33	44.81
CDX75051	Canola	cytosol, nucleus, plastid	44.79	44.79
CDY66222	Canola	cytosol, nucleus, plastid	42.94	42.94
CDX73602	Canola	cytosol, nucleus, plastid	41.72	42.24
CDX98772	Canola	cytosol, extracellular, nucleus	71.78	40.07
CDX90265	Canola	cytosol	31.9	40.0
CDY65025	Canola	cytosol	31.9	40.0
CDY49709	Canola	cytosol	31.9	39.69
CDX83273	Canola	cytosol, mitochondrion, nucleus	39.88	39.16
CDY57287	Canola	cytosol	32.52	38.97
CDY31184	Canola	cytosol, mitochondrion, nucleus	39.26	37.87
CDX92701	Canola	cytosol	30.67	37.04
CDY22831	Canola	cytosol, nucleus, plastid	38.04	36.9
CDY25219	Canola	cytosol, nucleus, plastid	38.04	36.9
CDY60839	Canola	nucleus, plastid	36.81	36.59
CDY00788	Canola	cytosol, nucleus, plastid	31.29	32.9
CDX73811	Canola	nucleus	31.9	32.7
CDY52666	Canola	nucleus	30.06	31.61
CDY08419	Canola	nucleus	30.67	31.45
CDY67538	Canola	nucleus	30.67	31.45
CDY50536	Canola	nucleus	30.06	31.41

Protein Annotations

MapMan:35.1	Gene3D:4.10.1110.10	GO:A0A078E4X7	InterPro:AN1-like_Znf	EnsemblPlants:CDX94483	ProteinID:CDX94483
ProteinID:CDX94483.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0008270
EnsemblPlantsGene:GSBRNA2T00157681001	InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896	PFAM:PF01428	PFAM:PF01754
PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF38	SMART:SM00154	SMART:SM00259
SUPFAM:SSF118310	SUPFAM:SSF57716	UniParc:UPI0004EF1D8B	InterPro:Znf_A20	InterPro:Znf_AN1	:

Description

BnaC09g23530D

Coordinates

chrLK031882:+:148080..149655

Molecular Weight (calculated)

17627.1 Da

IEP (calculated)

8.922

GRAVY (calculated)

-0.517

Length

163 amino acids

Sequence
(BLAST)

001: MSSEQNNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVEKSL KLPSCNLITA PEPKQPLETK PASLETVVIA GTSSPSKPTR
101: PNRCFSCNKK VGVMGFKCKC GSTFCGSHRY PEKHECSFDF KEVGRGAIAK ANPVVKADKV QRI

Best Arabidopsis Sequence Match ( AT4G12040.2 )
(BLAST)

001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI

Arabidopsis Description

SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.