Factsheet for Bra029435.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86725	Canola	nucleus, plastid	92.0	98.77
CDX94483	Canola	plastid	90.86	97.55
Bra033124.1-P	Field mustard	nucleus, plastid	87.43	88.95
AT4G12040.1	Thale cress	cytosol, nucleus, plastid	87.43	87.43
Bra015203.1-P	Field mustard	plastid	51.43	83.33
Bra017832.1-P	Field mustard	nucleus	50.86	69.53
Bra023869.1-P	Field mustard	plastid	57.71	69.18
Bra028223.1-P	Field mustard	nucleus	50.86	68.99
Bra026970.1-P	Field mustard	nucleus	57.71	65.16
Bra036643.1-P	Field mustard	nucleus	34.86	54.95
Bra023061.1-P	Field mustard	cytosol, nucleus, plastid	42.86	46.88
Bra005282.1-P	Field mustard	nucleus	42.29	45.96
Bra019645.1-P	Field mustard	cytosol, nucleus, plastid	40.57	43.56
Bra006949.1-P	Field mustard	cytosol, nucleus, plastid	43.43	43.18
Bra014276.1-P	Field mustard	cytosol	19.43	42.5
Bra000505.1-P	Field mustard	cytosol, mitochondrion, nucleus	39.43	41.82
Bra019354.1-P	Field mustard	cytosol, extracellular, nucleus	69.71	41.78
Bra010753.1-P	Field mustard	cytosol	30.29	40.77
Bra019169.1-P	Field mustard	cytosol	30.29	40.46
Bra028533.1-P	Field mustard	cytosol, nucleus, plastid	41.14	38.5
Bra018900.1-P	Field mustard	cytosol, nucleus, plastid	36.57	38.1
Bra014278.1-P	Field mustard	nucleus	35.43	34.83
Bra001461.1-P	Field mustard	nucleus	30.29	33.33
Bra038739.1-P	Field mustard	nucleus	29.14	32.69
Bra034748.1-P	Field mustard	nucleus	29.14	32.08

Protein Annotations

MapMan:35.1	Gene3D:4.10.1110.10	InterPro:AN1-like_Znf	EnsemblPlantsGene:Bra029435	EnsemblPlants:Bra029435.1	EnsemblPlants:Bra029435.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0008270	GO:GO:0046872
InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896	UniProt:M4EKW8	PFAM:PF01428	PFAM:PF01754
PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF38	SMART:SM00154	SMART:SM00259
SUPFAM:SSF118310	SUPFAM:SSF57716	UniParc:UPI00025427EB	InterPro:Znf_A20	InterPro:Znf_AN1	:

Description

AT4G12040 (E=7e-084) | zinc finger (AN1-like) family protein

Coordinates

chrA09:-:18093432..18093959

Molecular Weight (calculated)

18808.4 Da

IEP (calculated)

8.352

GRAVY (calculated)

-0.516

Length

175 amino acids

Sequence
(BLAST)

001: MSSEQNNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVEKSL KLPSCSLITA PEPKQPLETK PASVETVVIA ETSSVPPVAT
101: GQDEGEPSKP ARPNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRGAI AKANPVVKAD KVQRI

Best Arabidopsis Sequence Match ( AT4G12040.2 )
(BLAST)

001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI

Arabidopsis Description

SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.