Factsheet for Bra006949.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73602	Canola	cytosol, nucleus, plastid	88.07	96.27
Bra019645.1-P	Field mustard	cytosol, nucleus, plastid	81.25	87.73
AT3G52800.2	Thale cress	nucleus	77.27	80.0
Bra028533.1-P	Field mustard	cytosol, nucleus, plastid	84.66	79.68
Bra023061.1-P	Field mustard	cytosol, nucleus, plastid	72.16	79.38
Bra005282.1-P	Field mustard	nucleus	70.45	77.02
GSMUA_Achr3P22730_001	Banana	cytosol, mitochondrion, nucleus	49.43	63.97
VIT_08s0007g03530.t01	Wine grape	nucleus	56.82	62.11
GSMUA_Achr6P17330_001	Banana	nucleus	48.86	59.72
KRH67896	Soybean	cytosol, nucleus, plastid	52.84	58.12
KRG96184	Soybean	cytosol, nucleus, plastid	53.98	57.93
GSMUA_Achr8P07710_001	Banana	cytosol, mitochondrion, nucleus	48.3	56.29
KRH30848	Soybean	nucleus	54.55	55.81
KRH32726	Soybean	cytosol, nucleus, plastid	55.68	55.37
EES05173	Sorghum	cytosol, mitochondrion, nucleus	45.45	53.33
Bra014276.1-P	Field mustard	cytosol	23.3	51.25
Bra036643.1-P	Field mustard	nucleus	31.25	49.55
Bra026970.1-P	Field mustard	nucleus	43.18	49.03
Os02t0530300-01	Rice	cytosol, nucleus, plastid	42.61	48.7
KRH30019	Soybean	cytosol	39.2	48.25
PGSC0003DMT400050131	Potato	cytosol, nucleus, plastid	48.3	46.45
Bra000505.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.61	45.45
Bra018900.1-P	Field mustard	cytosol, nucleus, plastid	42.61	44.64
Bra015203.1-P	Field mustard	plastid	26.7	43.52
Bra029435.1-P	Field mustard	plastid	43.18	43.43
Bra014278.1-P	Field mustard	nucleus	42.61	42.13
Bra010753.1-P	Field mustard	cytosol	30.11	40.77
Bra033124.1-P	Field mustard	nucleus, plastid	39.77	40.7
Bra019169.1-P	Field mustard	cytosol	30.11	40.46
Bra038739.1-P	Field mustard	nucleus	32.95	37.18
Bra034748.1-P	Field mustard	nucleus	33.52	37.11
Bra001461.1-P	Field mustard	nucleus	32.95	36.48
Bra017832.1-P	Field mustard	nucleus	26.14	35.94
Bra028223.1-P	Field mustard	nucleus	26.14	35.66
EES03677	Sorghum	peroxisome, plastid	34.66	34.86
Bra023869.1-P	Field mustard	plastid	21.59	26.03
Bra019354.1-P	Field mustard	cytosol, extracellular, nucleus	42.05	25.34
Os01t0765900-00	Rice	nucleus	40.34	20.0

Protein Annotations

MapMan:35.1	Gene3D:4.10.1110.10	InterPro:AN1-like_Znf	EnsemblPlantsGene:Bra006949	EnsemblPlants:Bra006949.1	EnsemblPlants:Bra006949.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0008270	GO:GO:0046872
InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896	UniProt:M4CRV7	PFAM:PF01428	PFAM:PF01754
PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF43	SMART:SM00154	SMART:SM00259
SUPFAM:SSF118310	SUPFAM:SSF57716	UniParc:UPI0002542EA5	InterPro:Znf_A20	InterPro:Znf_AN1	:

Description

AT3G52800 (E=2e-075) | zinc finger (AN1-like) family protein

Coordinates

chrA09:+:26436597..26437127

Molecular Weight (calculated)

19003.8 Da

IEP (calculated)

8.690

GRAVY (calculated)

-0.419

Length

176 amino acids

Sequence
(BLAST)

001: MAEEHRCQTP EGPRLCANNC GFLGSSATMN LCSNCYGDLC LKQQQQASIK TTVESSLSAV SPPSTEIASV SSPVISPLVQ NPSAELEVTK KNVPATLTPP
101: PSQTTTEEKQ LKRPNRCTTC RKRVGLTGFK CRCGTTFCGV HRYPEVHGCT FDFKSAGREE IAKANPLVKA AKLQKI

Best Arabidopsis Sequence Match ( AT3G52800.1 )
(BLAST)

001: MAEEHRCQTP ESNRLCVNNC GFLGSSATMN LCSNCYGDLC LKQQQQSSSI KSTVESSLSV SPPSSSSSEI SSPIIPPLLK NPSVKLEVPE KKAVISLPTT
101: EQNQQQRPNR CTTCRKRVGL TGFKCRCGTM FCGVHRYPEI HGCSYDFKSA GREEIAKANP LVKAAKLQKI

Arabidopsis Description

SAP6A20/AN1-like zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VIF4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.