Factsheet for Bra017832.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028223.1-P	Field mustard	nucleus	100.0	99.22
Bra015203.1-P	Field mustard	plastid	82.81	98.15
CDY00455	Canola	cytosol	34.38	63.77
CDY04388	Canola	cytosol	32.03	59.42
Bra033124.1-P	Field mustard	nucleus, plastid	75.0	55.81
Bra029435.1-P	Field mustard	plastid	69.53	50.86
AT4G12040.1	Thale cress	cytosol, nucleus, plastid	67.19	49.14
Bra036643.1-P	Field mustard	nucleus	34.38	39.64
Bra026970.1-P	Field mustard	nucleus	46.88	38.71
Bra023869.1-P	Field mustard	plastid	43.75	38.36
Bra014276.1-P	Field mustard	cytosol	22.66	36.25
Bra005282.1-P	Field mustard	nucleus	35.16	27.95
Bra000505.1-P	Field mustard	cytosol, mitochondrion, nucleus	35.94	27.88
Bra010753.1-P	Field mustard	cytosol	28.12	27.69
Bra019645.1-P	Field mustard	cytosol, nucleus, plastid	35.16	27.61
Bra023061.1-P	Field mustard	cytosol, nucleus, plastid	34.38	27.5
Bra019354.1-P	Field mustard	cytosol, extracellular, nucleus	60.94	26.71
Bra006949.1-P	Field mustard	cytosol, nucleus, plastid	35.94	26.14
Bra019169.1-P	Field mustard	cytosol	26.56	25.95
Bra018900.1-P	Field mustard	cytosol, nucleus, plastid	32.81	25.0
Bra001461.1-P	Field mustard	nucleus	30.47	24.53
Bra038739.1-P	Field mustard	nucleus	28.91	23.72
Bra014278.1-P	Field mustard	nucleus	32.81	23.6
Bra034748.1-P	Field mustard	nucleus	28.91	23.27
Bra028533.1-P	Field mustard	cytosol, nucleus, plastid	33.59	22.99

Protein Annotations

EnsemblPlants:Bra017832.1	EnsemblPlants:Bra017832.1-P	EnsemblPlantsGene:Bra017832	Gene3D:4.10.1110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	GO:GO:0046872	InterPro:AN1-like_Znf	InterPro:IPR000058	InterPro:IPR035896	InterPro:Znf_AN1
PANTHER:PTHR10634	PANTHER:PTHR10634:SF38	PFAM:PF01428	PFscan:PS51039	SMART:SM00154	SUPFAM:SSF118310
UniParc:UPI0002540D4C	UniProt:M4DMU6	MapMan:35.1	:	:	:

Description

AT4G12040 (E=8e-036) | zinc finger (AN1-like) family protein

Coordinates

chrA03:-:30798442..30799556

Molecular Weight (calculated)

14300.0 Da

IEP (calculated)

8.502

GRAVY (calculated)

-0.897

Length

128 amino acids

Sequence
(BLAST)

001: MESREIVPGI FEKKKKKGTT MNSEQNNSTS FPPTEPELCD NRCAEPSSAP IATGQEEAEP SKPARTNRCF SCNKKAGVMG FKCKCGSTFC RSHRCPEKHE
101: CSFNFKEVGR DVIAKANHVI KEDKVERI

Best Arabidopsis Sequence Match ( AT4G12040.1 )
(BLAST)

001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI

Arabidopsis Description

SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.