Factsheet for Bra023869.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033124.1-P	Field mustard	nucleus, plastid	78.08	66.28
Bra029435.1-P	Field mustard	plastid	69.18	57.71
AT4G12040.1	Thale cress	cytosol, nucleus, plastid	68.49	57.14
CDY00455	Canola	cytosol	26.71	56.52
CDY04388	Canola	cytosol	24.66	52.17
Bra015203.1-P	Field mustard	plastid	38.36	51.85
Bra017832.1-P	Field mustard	nucleus	38.36	43.75
Bra028223.1-P	Field mustard	nucleus	38.36	43.41
Bra026970.1-P	Field mustard	nucleus	38.36	36.13
Bra019354.1-P	Field mustard	cytosol, extracellular, nucleus	52.05	26.03
Bra005282.1-P	Field mustard	nucleus	28.08	25.47
Bra023061.1-P	Field mustard	cytosol, nucleus, plastid	27.4	25.0
Bra000505.1-P	Field mustard	cytosol, mitochondrion, nucleus	25.34	22.42
Bra036643.1-P	Field mustard	nucleus	16.44	21.62
Bra006949.1-P	Field mustard	cytosol, nucleus, plastid	26.03	21.59
Bra019645.1-P	Field mustard	cytosol, nucleus, plastid	23.97	21.47
Bra010753.1-P	Field mustard	cytosol	17.81	20.0
Bra028533.1-P	Field mustard	cytosol, nucleus, plastid	25.34	19.79
Bra018900.1-P	Field mustard	cytosol, nucleus, plastid	22.6	19.64
Bra014278.1-P	Field mustard	nucleus	21.92	17.98
Bra019169.1-P	Field mustard	cytosol	15.75	17.56
Bra038739.1-P	Field mustard	nucleus	17.12	16.03
Bra034748.1-P	Field mustard	nucleus	17.12	15.72
Bra001461.1-P	Field mustard	nucleus	17.12	15.72
Bra014276.1-P	Field mustard	cytosol	5.48	10.0

Protein Annotations

EnsemblPlants:Bra023869.1	EnsemblPlants:Bra023869.1-P	EnsemblPlantsGene:Bra023869	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0008270	InterPro:IPR002653	InterPro:Znf_A20	PANTHER:PTHR10634	PANTHER:PTHR10634:SF38
PFAM:PF01754	SMART:SM00259	SUPFAM:SSF57716	UniParc:UPI000254453B	UniProt:M4E515	MapMan:35.1

Description

AT4G12040 (E=4e-047) | zinc finger (AN1-like) family protein

Coordinates

chrA01:+:20631882..20632322

Molecular Weight (calculated)

16277.4 Da

IEP (calculated)

7.615

GRAVY (calculated)

-0.388

Length

146 amino acids

Sequence
(BLAST)

001: MNSEQNNSTS FPPTEPELCD NRCGFFVSSN MNLCSKCYRI LRAEEDLTAV AKSAVKNSLK LPSCSLIITP EQKQPLETKP ASVVVTAEPS SVPIATGQEE
101: AEPSKPARTN RCFSCNKNVR SLSVNYNQHI LILLWCCLYK REEIPH

Best Arabidopsis Sequence Match ( AT4G12040.2 )
(BLAST)

001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI

Arabidopsis Description

SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.