Factsheet for Bra028533.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13347	Canola	nucleus	81.28	98.7
CDX67537	Canola	cytosol, nucleus, plastid	79.14	98.67
Bra019645.1-P	Field mustard	cytosol, nucleus, plastid	74.87	85.89
Bra006949.1-P	Field mustard	cytosol, nucleus, plastid	79.68	84.66
Bra023061.1-P	Field mustard	cytosol, nucleus, plastid	67.38	78.75
AT3G52800.2	Thale cress	nucleus	70.05	77.06
Bra005282.1-P	Field mustard	nucleus	64.17	74.53
GSMUA_Achr3P22730_001	Banana	cytosol, mitochondrion, nucleus	45.45	62.5
VIT_08s0007g03530.t01	Wine grape	nucleus	52.41	60.87
GSMUA_Achr6P17330_001	Banana	nucleus	45.99	59.72
KRG96184	Soybean	cytosol, nucleus, plastid	51.34	58.54
KRH67896	Soybean	cytosol, nucleus, plastid	49.73	58.12
KRH30848	Soybean	nucleus	52.41	56.98
KRH32726	Soybean	cytosol, nucleus, plastid	53.48	56.5
GSMUA_Achr8P07710_001	Banana	cytosol, mitochondrion, nucleus	43.85	54.3
EES05173	Sorghum	cytosol, mitochondrion, nucleus	41.71	52.0
Bra014276.1-P	Field mustard	cytosol	21.39	50.0
Os02t0530300-01	Rice	cytosol, nucleus, plastid	40.64	49.35
KRH30019	Soybean	cytosol	37.43	48.95
Bra026970.1-P	Field mustard	nucleus	40.11	48.39
Bra036643.1-P	Field mustard	nucleus	27.81	46.85
PGSC0003DMT400050131	Potato	cytosol, nucleus, plastid	44.92	45.9
Bra000505.1-P	Field mustard	cytosol, mitochondrion, nucleus	40.11	45.45
Bra018900.1-P	Field mustard	cytosol, nucleus, plastid	40.11	44.64
Bra014278.1-P	Field mustard	nucleus	40.11	42.13
Bra029435.1-P	Field mustard	plastid	38.5	41.14
Bra015203.1-P	Field mustard	plastid	23.53	40.74
Bra010753.1-P	Field mustard	cytosol	27.81	40.0
Bra019169.1-P	Field mustard	cytosol	27.81	39.69
Bra033124.1-P	Field mustard	nucleus, plastid	35.83	38.95
Bra038739.1-P	Field mustard	nucleus	30.48	36.54
Bra034748.1-P	Field mustard	nucleus	31.02	36.48
Bra001461.1-P	Field mustard	nucleus	30.48	35.85
EES03677	Sorghum	peroxisome, plastid	31.55	33.71
Bra017832.1-P	Field mustard	nucleus	22.99	33.59
Bra028223.1-P	Field mustard	nucleus	22.99	33.33
Bra023869.1-P	Field mustard	plastid	19.79	25.34
Bra019354.1-P	Field mustard	cytosol, extracellular, nucleus	38.5	24.66
Os01t0765900-00	Rice	nucleus	36.36	19.15

Protein Annotations

MapMan:35.1	Gene3D:4.10.1110.10	InterPro:AN1-like_Znf	EnsemblPlantsGene:Bra028533	EnsemblPlants:Bra028533.1	EnsemblPlants:Bra028533.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0008270	GO:GO:0046872
InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896	UniProt:M4EIB8	PFAM:PF01428	PFAM:PF01754
PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF43	SMART:SM00154	SMART:SM00259
SUPFAM:SSF118310	SUPFAM:SSF57716	UniParc:UPI0002543458	InterPro:Znf_A20	InterPro:Znf_AN1	SEG:seg

Description

AT3G52800 (E=3e-040) | zinc finger (AN1-like) family protein

Coordinates

chrA02:+:919407..919970

Molecular Weight (calculated)

20115.0 Da

IEP (calculated)

8.158

GRAVY (calculated)

-0.442

Length

187 amino acids

Sequence
(BLAST)

001: MAEEHRCQTP EGPRLCANNC GFLGSSATMN LCSNCYGDLC LKQQQASMKS TVESSLSAVS PPSSEIGSMQ STVESSLSDV SPPSPETISI SSPMIQPLVR
101: NPSAELEVTA TKTVTPPPEQ QQKRPNRCTT CRKRVGLTGF KCRCGTTFCG AHRYPEVHGC TFDFKSAGRE EIAKANPLVQ AAKLQKI

Best Arabidopsis Sequence Match ( AT3G52800.1 )
(BLAST)

001: MAEEHRCQTP ESNRLCVNNC GFLGSSATMN LCSNCYGDLC LKQQQQSSSI KSTVESSLSV SPPSSSSSEI SSPIIPPLLK NPSVKLEVPE KKAVISLPTT
101: EQNQQQRPNR CTTCRKRVGL TGFKCRCGTM FCGVHRYPEI HGCSYDFKSA GREEIAKANP LVKAAKLQKI

Arabidopsis Description

SAP6A20/AN1-like zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VIF4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.