Factsheet for Bra033124.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015203.1-P	Field mustard	plastid	55.81	88.89
Bra029435.1-P	Field mustard	plastid	88.95	87.43
AT4G12040.1	Thale cress	cytosol, nucleus, plastid	87.79	86.29
Bra023869.1-P	Field mustard	plastid	66.28	78.08
Bra017832.1-P	Field mustard	nucleus	55.81	75.0
Bra028223.1-P	Field mustard	nucleus	55.81	74.42
CDY04388	Canola	cytosol	27.33	68.12
CDY00455	Canola	cytosol	26.16	65.22
Bra026970.1-P	Field mustard	nucleus	56.98	63.23
Bra036643.1-P	Field mustard	nucleus	36.05	55.86
Bra023061.1-P	Field mustard	cytosol, nucleus, plastid	40.12	43.12
Bra005282.1-P	Field mustard	nucleus	40.12	42.86
Bra000505.1-P	Field mustard	cytosol, mitochondrion, nucleus	40.7	42.42
Bra010753.1-P	Field mustard	cytosol	30.81	40.77
Bra019645.1-P	Field mustard	cytosol, nucleus, plastid	38.37	40.49
Bra019169.1-P	Field mustard	cytosol	30.81	40.46
Bra019354.1-P	Field mustard	cytosol, extracellular, nucleus	68.02	40.07
Bra014276.1-P	Field mustard	cytosol	18.6	40.0
Bra006949.1-P	Field mustard	cytosol, nucleus, plastid	40.7	39.77
Bra018900.1-P	Field mustard	cytosol, nucleus, plastid	35.47	36.31
Bra028533.1-P	Field mustard	cytosol, nucleus, plastid	38.95	35.83
Bra014278.1-P	Field mustard	nucleus	33.72	32.58
Bra001461.1-P	Field mustard	nucleus	29.65	32.08
Bra038739.1-P	Field mustard	nucleus	29.07	32.05
Bra034748.1-P	Field mustard	nucleus	29.07	31.45

Protein Annotations

MapMan:35.1	Gene3D:4.10.1110.10	InterPro:AN1-like_Znf	EnsemblPlantsGene:Bra033124	EnsemblPlants:Bra033124.1	EnsemblPlants:Bra033124.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0008270	GO:GO:0046872
InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896	UniProt:M4EWE0	PFAM:PF01428	PFAM:PF01754
PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF38	SMART:SM00154	SMART:SM00259
SUPFAM:SSF118310	SUPFAM:SSF57716	UniParc:UPI00025471E6	InterPro:Znf_A20	InterPro:Znf_AN1	:

Description

AT4G12040 (E=5e-085) | zinc finger (AN1-like) family protein

Coordinates

chrA02:-:16724927..16725445

Molecular Weight (calculated)

18653.1 Da

IEP (calculated)

8.206

GRAVY (calculated)

-0.530

Length

172 amino acids

Sequence
(BLAST)

001: MSSEQNNSTS FPPTEPNLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDHTA VAKAAVKNSL KLPSCSLIIT PEQKQPLETK PASVVVTAEP SSVPIATGQE
101: EAEPSKPART NRCFSCNKKV GVMGFKCKCG STFCGSHRYP EKHECSFDFK EVGRDAISKA NPVIKADKVE RI

Best Arabidopsis Sequence Match ( AT4G12040.2 )
(BLAST)

001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI

Arabidopsis Description

SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.