CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00455	Canola	cytosol	95.65	95.65
Bra015203.1-P	Field mustard	plastid	59.42	37.96
Bra017832.1-P	Field mustard	nucleus	59.42	32.03
Bra028223.1-P	Field mustard	nucleus	59.42	31.78
Bra033124.1-P	Field mustard	nucleus, plastid	68.12	27.33
CDX86725	Canola	nucleus, plastid	63.77	26.99
CDX94483	Canola	plastid	62.32	26.38
AT4G12040.1	Thale cress	cytosol, nucleus, plastid	65.22	25.71
Bra023869.1-P	Field mustard	plastid	52.17	24.66
CDY03251	Canola	nucleus	47.83	23.4
CDY26566	Canola	nucleus	49.28	21.94
CDY16005	Canola	nucleus	49.28	21.38
CDY51557	Canola	nucleus	63.77	20.28
CDX95378	Canola	cytosol, nucleus, plastid	34.78	15.58
CDX67537	Canola	cytosol, nucleus, plastid	33.33	15.33
CDY13347	Canola	nucleus	33.33	14.94
CDX73602	Canola	cytosol, nucleus, plastid	34.78	14.91
CDY00788	Canola	cytosol, nucleus, plastid	33.33	14.84
CDY52666	Canola	nucleus	33.33	14.84
CDX84135	Canola	cytosol, nucleus, plastid	31.88	14.77
CDY50536	Canola	nucleus	33.33	14.74
CDX90265	Canola	cytosol	27.54	14.62
CDY65025	Canola	cytosol	27.54	14.62
CDX79670	Canola	nucleus	31.88	14.57
CDY08419	Canola	nucleus	33.33	14.47
CDY67538	Canola	nucleus	33.33	14.47
CDX73811	Canola	nucleus	33.33	14.47
CDY39818	Canola	nucleus	23.19	14.41
CDX75051	Canola	cytosol, nucleus, plastid	33.33	14.11
CDY66222	Canola	cytosol, nucleus, plastid	33.33	14.11
CDY60839	Canola	nucleus, plastid	33.33	14.02
CDX84565	Canola	cytosol, nucleus, plastid	31.88	13.75
CDY25219	Canola	cytosol, nucleus, plastid	33.33	13.69
CDY22831	Canola	cytosol, nucleus, plastid	33.33	13.69
CDX98772	Canola	cytosol, extracellular, nucleus	55.07	13.01
CDX92701	Canola	cytosol	24.64	12.59
CDY57287	Canola	cytosol	24.64	12.5
CDY49709	Canola	cytosol	23.19	12.21
CDX83273	Canola	cytosol, mitochondrion, nucleus	23.19	9.64
CDY31184	Canola	cytosol, mitochondrion, nucleus	23.19	9.47

Protein Annotations

EnsemblPlants:CDY04388

EnsemblPlantsGene:GSBRNA2T00118375001

ProteinID:CDY04388

ProteinID:CDY04388.1

UniParc:UPI0004EDD656

MapMan:35.2

Description

BnaC02g28600D

Coordinates

chrLK031953:+:143336..144905

Molecular Weight (calculated)

7746.4 Da

IEP (calculated)

7.689

GRAVY (calculated)

-0.209

Length

69 amino acids

Sequence
(BLAST)

1: MSSEQNNSTS FPPTEPKLCD NGCASVVVTA EPCNKKAGVM GFKCKCVNYN QYILILLWCC LYKREEIPH

Best Arabidopsis Sequence Match ( AT4G12040.1 )
(BLAST)

001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI

Arabidopsis Description

SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.