Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27580.1 | CDX67865 | AT3G61790.1 | 21798944 |
| AT2G27580.1 | CDX89132 | AT3G61790.1 | 21798944 |
| AT2G27580.1 | CDY25077 | AT3G61790.1 | 21798944 |
| AT2G27580.1 | CDY43950 | AT3G61790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000505.1-P | Field mustard | cytosol, mitochondrion, nucleus | 92.31 | 94.55 |
| CDX83273 | Canola | cytosol, mitochondrion, nucleus | 92.31 | 93.98 |
| AT2G27580.1 | Thale cress | cytosol, mitochondrion, nucleus | 76.92 | 79.75 |
| GSMUA_Achr3P22730_001 | Banana | cytosol, mitochondrion, nucleus | 39.05 | 48.53 |
| CDX67537 | Canola | cytosol, nucleus, plastid | 42.6 | 48.0 |
| CDX84135 | Canola | cytosol, nucleus, plastid | 42.01 | 47.65 |
| GSMUA_Achr6P17330_001 | Banana | nucleus | 40.24 | 47.22 |
| CDX79670 | Canola | nucleus | 42.01 | 47.02 |
| CDY39818 | Canola | nucleus | 30.77 | 46.85 |
| CDX95378 | Canola | cytosol, nucleus, plastid | 42.01 | 46.1 |
| CDX84565 | Canola | cytosol, nucleus, plastid | 42.6 | 45.0 |
| CDY13347 | Canola | nucleus | 40.83 | 44.81 |
| CDX73602 | Canola | cytosol, nucleus, plastid | 42.6 | 44.72 |
| CDY03251 | Canola | nucleus | 37.28 | 44.68 |
| CDX75051 | Canola | cytosol, nucleus, plastid | 42.6 | 44.17 |
| CDY66222 | Canola | cytosol, nucleus, plastid | 42.6 | 44.17 |
| CDY26566 | Canola | nucleus | 40.24 | 43.87 |
| GSMUA_Achr8P07710_001 | Banana | cytosol, mitochondrion, nucleus | 39.05 | 43.71 |
| CDY16005 | Canola | nucleus | 40.83 | 43.4 |
| PGSC0003DMT400006957 | Potato | cytosol | 37.87 | 42.67 |
| Solyc09g009590.1.1 | Tomato | cytosol | 37.87 | 42.38 |
| CDY22831 | Canola | cytosol, nucleus, plastid | 40.24 | 40.48 |
| CDY25219 | Canola | cytosol, nucleus, plastid | 40.24 | 40.48 |
| EES05173 | Sorghum | cytosol, mitochondrion, nucleus | 35.5 | 40.0 |
| CDY60839 | Canola | nucleus, plastid | 38.46 | 39.63 |
| Solyc10g083460.1.1 | Tomato | nucleus, peroxisome, plastid | 37.28 | 39.62 |
| CDX94483 | Canola | plastid | 37.87 | 39.26 |
| PGSC0003DMT400072393 | Potato | cytosol, nucleus, peroxisome | 36.69 | 38.99 |
| CDX86725 | Canola | nucleus, plastid | 37.28 | 38.65 |
| Os02t0530300-01 | Rice | cytosol, nucleus, plastid | 34.91 | 38.31 |
| CDY49709 | Canola | cytosol | 29.59 | 38.17 |
| CDY65025 | Canola | cytosol | 28.4 | 36.92 |
| CDY57287 | Canola | cytosol | 29.59 | 36.76 |
| CDX90265 | Canola | cytosol | 27.81 | 36.15 |
| CDX92701 | Canola | cytosol | 28.4 | 35.56 |
| CDY52666 | Canola | nucleus | 30.18 | 32.9 |
| CDY50536 | Canola | nucleus | 30.18 | 32.69 |
| CDY67538 | Canola | nucleus | 30.18 | 32.08 |
| CDX73811 | Canola | nucleus | 30.18 | 32.08 |
| CDY08419 | Canola | nucleus | 30.18 | 32.08 |
| CDY00788 | Canola | cytosol, nucleus, plastid | 28.99 | 31.61 |
| EES03677 | Sorghum | peroxisome, plastid | 32.54 | 31.43 |
| CDY51557 | Canola | nucleus | 38.46 | 29.95 |
| CDY04388 | Canola | cytosol | 9.47 | 23.19 |
| CDY00455 | Canola | cytosol | 8.88 | 21.74 |
| CDX98772 | Canola | cytosol, extracellular, nucleus | 37.28 | 21.58 |
| Os01t0765900-00 | Rice | nucleus | 34.32 | 16.34 |
Protein Annotations
| MapMan:35.1 | Gene3D:4.10.1110.10 | GO:A0A078H168 | UniProt:A0A078H168 | InterPro:AN1-like_Znf | EnsemblPlants:CDY31184 |
| ProteinID:CDY31184 | ProteinID:CDY31184.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0008270 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00047293001 | InterPro:IPR000058 | InterPro:IPR002653 | InterPro:IPR035896 |
| PFAM:PF01428 | PFAM:PF01754 | PFscan:PS51036 | PFscan:PS51039 | PANTHER:PTHR10634 | PANTHER:PTHR10634:SF47 |
| SMART:SM00154 | SMART:SM00259 | SUPFAM:SSF118310 | SUPFAM:SSF57716 | UniParc:UPI0002663172 | InterPro:Znf_A20 |
| InterPro:Znf_AN1 | SEG:seg | : | : | : | : |
Description
BnaC03g47070DBnaC03g47070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H168]
Coordinates
chrLK032268:-:189997..190809
Molecular Weight (calculated)
18853.3 Da
IEP (calculated)
8.046
GRAVY (calculated)
-0.841
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEHRLQEP RLCANDCGFF GNTATQNLCS KCFRDLKHEQ ENSSTAKNAL KQTLAACVAS SSVSSPPPPP PPADLTSDLK EVNTENPGKR AASEPEEEEE
101: QKPPQDPKRC LTCRRRVGIT GFRCRCGFVF CGTHRYAEQH ECTFDFKRVG KEKIAKANPI VKAEKLEKI
101: QKPPQDPKRC LTCRRRVGIT GFRCRCGFVF CGTHRYAEQH ECTFDFKRVG KEKIAKANPI VKAEKLEKI
001: MAEEHRLQEP RLCANNCGFF GSTATQNLCS KCFRDLQHQE QNSSTAKHAL TQSLAAVGAA ASSSVSPPPP PPADSKEIVE AKSEKRAAAE PEEADGPPQD
101: PKRCLTCRRR VGITGFRCRC GFVFCGTHRY AEQHECSFDF KRMGKDKIAK ANPIVKADKL EKI
101: PKRCLTCRRR VGITGFRCRC GFVFCGTHRY AEQHECSFDF KRMGKDKIAK ANPIVKADKL EKI
Arabidopsis Description
SAP3Zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNU9]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.