Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G12040.1 | Thale cress | cytosol, nucleus, plastid | 60.37 | 74.86 |
| CDX86725 | Canola | nucleus, plastid | 55.76 | 74.23 |
| CDX94483 | Canola | plastid | 55.76 | 74.23 |
| CDY04388 | Canola | cytosol | 20.28 | 63.77 |
| CDY00455 | Canola | cytosol | 19.35 | 60.87 |
| CDY26566 | Canola | nucleus | 42.86 | 60.0 |
| CDY16005 | Canola | nucleus | 42.86 | 58.49 |
| CDY03251 | Canola | nucleus | 36.87 | 56.74 |
| CDY39818 | Canola | nucleus | 26.73 | 52.25 |
| CDX79670 | Canola | nucleus | 30.88 | 44.37 |
| CDX67537 | Canola | cytosol, nucleus, plastid | 30.41 | 44.0 |
| CDX84135 | Canola | cytosol, nucleus, plastid | 29.49 | 42.95 |
| CDX95378 | Canola | cytosol, nucleus, plastid | 30.41 | 42.86 |
| CDX84565 | Canola | cytosol, nucleus, plastid | 31.34 | 42.5 |
| CDY13347 | Canola | nucleus | 29.95 | 42.21 |
| CDX75051 | Canola | cytosol, nucleus, plastid | 30.88 | 41.1 |
| CDX98772 | Canola | cytosol, extracellular, nucleus | 55.3 | 41.1 |
| CDX73602 | Canola | cytosol, nucleus, plastid | 30.41 | 40.99 |
| CDY66222 | Canola | cytosol, nucleus, plastid | 30.41 | 40.49 |
| CDY49709 | Canola | cytosol | 24.42 | 40.46 |
| CDX90265 | Canola | cytosol | 23.96 | 40.0 |
| CDY65025 | Canola | cytosol | 23.96 | 40.0 |
| CDX83273 | Canola | cytosol, mitochondrion, nucleus | 30.41 | 39.76 |
| CDY57287 | Canola | cytosol | 24.88 | 39.71 |
| CDY31184 | Canola | cytosol, mitochondrion, nucleus | 29.95 | 38.46 |
| CDX92701 | Canola | cytosol | 23.5 | 37.78 |
| CDY25219 | Canola | cytosol, nucleus, plastid | 28.57 | 36.9 |
| CDY22831 | Canola | cytosol, nucleus, plastid | 28.57 | 36.9 |
| CDY60839 | Canola | nucleus, plastid | 27.19 | 35.98 |
| CDY00788 | Canola | cytosol, nucleus, plastid | 23.96 | 33.55 |
| CDX73811 | Canola | nucleus | 24.42 | 33.33 |
| CDY52666 | Canola | nucleus | 23.5 | 32.9 |
| CDY08419 | Canola | nucleus | 23.96 | 32.7 |
| CDY67538 | Canola | nucleus | 23.96 | 32.7 |
| CDY50536 | Canola | nucleus | 23.5 | 32.69 |
Protein Annotations
| MapMan:35.1 | Gene3D:4.10.1110.10 | GO:A0A078INP9 | UniProt:A0A078INP9 | InterPro:AN1-like_Znf | EnsemblPlants:CDY51557 |
| ProteinID:CDY51557 | ProteinID:CDY51557.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0008270 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00003739001 |
| InterPro:IPR000058 | InterPro:IPR002653 | InterPro:IPR035896 | PFAM:PF01428 | PFAM:PF01754 | PFscan:PS51036 |
| PFscan:PS51039 | PANTHER:PTHR10634 | PANTHER:PTHR10634:SF38 | SMART:SM00154 | SMART:SM00259 | SUPFAM:SSF118310 |
| SUPFAM:SSF57716 | TMHMM:TMhelix | UniParc:UPI0004EEF59E | InterPro:Znf_A20 | InterPro:Znf_AN1 | SEG:seg |
Description
BnaC03g73030DBnaC03g73030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INP9]
Coordinates
chrLK033005:+:71773..73212
Molecular Weight (calculated)
23836.1 Da
IEP (calculated)
7.928
GRAVY (calculated)
-0.547
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGTRAGHER DASWNRSSGF YWVTGVLCCL IGNALILLSD REHLSYDQER LGLKLIGDAS WNRCGNKRCD QGLGSEQNNS TSFPPTEPKL CDNGCGFFGS
101: PSNMNLCSKC YRSFHAEEEQ TEVAKAAPKP VSVVLTAEPS SVPVDEAEPS KPARPNRCFS CDKKVGVMGF KCKCGSTFCG SHRYPEKHEC SFDFKEVGRD
201: AIAKANPVVK ADKVQRI
101: PSNMNLCSKC YRSFHAEEEQ TEVAKAAPKP VSVVLTAEPS SVPVDEAEPS KPARPNRCFS CDKKVGVMGF KCKCGSTFCG SHRYPEKHEC SFDFKEVGRD
201: AIAKANPVVK ADKVQRI
001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI
Arabidopsis Description
SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.