Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27580.1 | CDX67865 | AT3G61790.1 | 21798944 |
| AT2G27580.1 | CDX89132 | AT3G61790.1 | 21798944 |
| AT2G27580.1 | CDY25077 | AT3G61790.1 | 21798944 |
| AT2G27580.1 | CDY43950 | AT3G61790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000505.1-P | Field mustard | cytosol, mitochondrion, nucleus | 98.19 | 98.79 |
| CDY31184 | Canola | cytosol, mitochondrion, nucleus | 93.98 | 92.31 |
| AT2G27580.1 | Thale cress | cytosol, mitochondrion, nucleus | 79.52 | 80.98 |
| GSMUA_Achr3P22730_001 | Banana | cytosol, mitochondrion, nucleus | 40.36 | 49.26 |
| CDX79670 | Canola | nucleus | 43.37 | 47.68 |
| CDX67537 | Canola | cytosol, nucleus, plastid | 42.77 | 47.33 |
| GSMUA_Achr6P17330_001 | Banana | nucleus | 40.96 | 47.22 |
| CDX84135 | Canola | cytosol, nucleus, plastid | 42.17 | 46.98 |
| CDX84565 | Canola | cytosol, nucleus, plastid | 43.98 | 45.62 |
| CDX95378 | Canola | cytosol, nucleus, plastid | 42.17 | 45.45 |
| CDY13347 | Canola | nucleus | 42.17 | 45.45 |
| CDY39818 | Canola | nucleus | 29.52 | 44.14 |
| CDX73602 | Canola | cytosol, nucleus, plastid | 42.77 | 44.1 |
| CDY26566 | Canola | nucleus | 40.96 | 43.87 |
| GSMUA_Achr8P07710_001 | Banana | cytosol, mitochondrion, nucleus | 39.76 | 43.71 |
| CDX75051 | Canola | cytosol, nucleus, plastid | 42.77 | 43.56 |
| CDY66222 | Canola | cytosol, nucleus, plastid | 42.77 | 43.56 |
| CDY16005 | Canola | nucleus | 40.96 | 42.77 |
| PGSC0003DMT400006957 | Potato | cytosol | 38.55 | 42.67 |
| CDY03251 | Canola | nucleus | 36.14 | 42.55 |
| Solyc09g009590.1.1 | Tomato | cytosol | 37.95 | 41.72 |
| CDY25219 | Canola | cytosol, nucleus, plastid | 42.17 | 41.67 |
| CDY22831 | Canola | cytosol, nucleus, plastid | 42.17 | 41.67 |
| EES05173 | Sorghum | cytosol, mitochondrion, nucleus | 36.75 | 40.67 |
| CDX94483 | Canola | plastid | 39.16 | 39.88 |
| CDY60839 | Canola | nucleus, plastid | 39.16 | 39.63 |
| Solyc10g083460.1.1 | Tomato | nucleus, peroxisome, plastid | 37.95 | 39.62 |
| CDX86725 | Canola | nucleus, plastid | 38.55 | 39.26 |
| PGSC0003DMT400072393 | Potato | cytosol, nucleus, peroxisome | 37.35 | 38.99 |
| Os02t0530300-01 | Rice | cytosol, nucleus, plastid | 35.54 | 38.31 |
| CDY65025 | Canola | cytosol | 29.52 | 37.69 |
| CDX90265 | Canola | cytosol | 29.52 | 37.69 |
| CDY49709 | Canola | cytosol | 29.52 | 37.4 |
| CDX92701 | Canola | cytosol | 29.52 | 36.3 |
| CDY57287 | Canola | cytosol | 29.52 | 36.03 |
| CDY52666 | Canola | nucleus | 30.72 | 32.9 |
| CDY50536 | Canola | nucleus | 30.72 | 32.69 |
| CDX73811 | Canola | nucleus | 30.72 | 32.08 |
| CDY08419 | Canola | nucleus | 30.72 | 32.08 |
| CDY67538 | Canola | nucleus | 30.72 | 32.08 |
| EES03677 | Sorghum | peroxisome, plastid | 33.73 | 32.0 |
| CDY00788 | Canola | cytosol, nucleus, plastid | 29.52 | 31.61 |
| CDY51557 | Canola | nucleus | 39.76 | 30.41 |
| CDY04388 | Canola | cytosol | 9.64 | 23.19 |
| CDX98772 | Canola | cytosol, extracellular, nucleus | 39.76 | 22.6 |
| CDY00455 | Canola | cytosol | 9.04 | 21.74 |
| Os01t0765900-00 | Rice | nucleus | 34.34 | 16.06 |
Protein Annotations
| MapMan:35.1 | Gene3D:4.10.1110.10 | GO:A0A078D7P3 | InterPro:AN1-like_Znf | EnsemblPlants:CDX83273 | ProteinID:CDX83273 |
| ProteinID:CDX83273.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0008270 |
| EnsemblPlantsGene:GSBRNA2T00138824001 | InterPro:IPR000058 | InterPro:IPR002653 | InterPro:IPR035896 | PFAM:PF01428 | PFAM:PF01754 |
| PFscan:PS51036 | PFscan:PS51039 | PANTHER:PTHR10634 | PANTHER:PTHR10634:SF47 | SMART:SM00154 | SMART:SM00259 |
| SUPFAM:SSF118310 | SUPFAM:SSF57716 | UniParc:UPI0001CAC8A0 | InterPro:Znf_A20 | InterPro:Znf_AN1 | SEG:seg |
Description
BnaA03g22330D
Coordinates
chrLK031832:-:761412..762232
Molecular Weight (calculated)
18558.9 Da
IEP (calculated)
8.214
GRAVY (calculated)
-0.859
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEHRLQEP RLCANDCGFF GNTATQNLCS KCFRDLKHEH ENSSTAKNAL KQTLAACVAS SSSVSPPPPP PPPSDLKEVN TENPEKRAAA SEPEEEEQKP
101: PQDPKRCLTC RRRVGITGFR CRCGFVFCGT HRYAEQHECT FDFKRVGKEK IAKANPIVKA DKLEKI
101: PQDPKRCLTC RRRVGITGFR CRCGFVFCGT HRYAEQHECT FDFKRVGKEK IAKANPIVKA DKLEKI
001: MAEEHRLQEP RLCANNCGFF GSTATQNLCS KCFRDLQHQE QNSSTAKHAL TQSLAAVGAA ASSSVSPPPP PPADSKEIVE AKSEKRAAAE PEEADGPPQD
101: PKRCLTCRRR VGITGFRCRC GFVFCGTHRY AEQHECSFDF KRMGKDKIAK ANPIVKADKL EKI
101: PKRCLTCRRR VGITGFRCRC GFVFCGTHRY AEQHECSFDF KRMGKDKIAK ANPIVKADKL EKI
Arabidopsis Description
SAP3Zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNU9]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.