Factsheet for GSMUA_Achr6P17330_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P06970_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27580.1	GSMUA_Achr5P06970_001	AT3G61790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P22730_001	Banana	cytosol, mitochondrion, nucleus	64.58	68.38
GSMUA_Achr8P07710_001	Banana	cytosol, mitochondrion, nucleus	64.58	61.59
VIT_08s0007g03530.t01	Wine grape	nucleus	67.36	60.25
CDX67537	Canola	cytosol, nucleus, plastid	60.42	58.0
CDX79670	Canola	nucleus	60.42	57.62
EES05173	Sorghum	cytosol, mitochondrion, nucleus	59.72	57.33
CDY13347	Canola	nucleus	59.72	55.84
KRH67896	Soybean	cytosol, nucleus, plastid	61.81	55.62
Bra023061.1-P	Field mustard	cytosol, nucleus, plastid	61.11	55.0
CDX84565	Canola	cytosol, nucleus, plastid	61.11	55.0
CDX95378	Canola	cytosol, nucleus, plastid	57.64	53.9
CDX84135	Canola	cytosol, nucleus, plastid	55.56	53.69
KRG96184	Soybean	cytosol, nucleus, plastid	61.11	53.66
Os02t0530300-01	Rice	cytosol, nucleus, plastid	56.94	53.25
Bra005282.1-P	Field mustard	nucleus	58.33	52.17
AT2G36320.1	Thale cress	cytosol, nucleus, plastid	57.64	51.55
CDX75051	Canola	cytosol, nucleus, plastid	58.33	51.53
CDY66222	Canola	cytosol, nucleus, plastid	58.33	51.53
Bra019645.1-P	Field mustard	cytosol, nucleus, plastid	57.64	50.92
CDX73602	Canola	cytosol, nucleus, plastid	56.25	50.31
Solyc10g083460.1.1	Tomato	nucleus, peroxisome, plastid	54.17	49.06
Bra006949.1-P	Field mustard	cytosol, nucleus, plastid	59.72	48.86
KRH26620	Soybean	nucleus	53.47	48.73
GSMUA_Achr9P27570_001	Banana	cytosol, mitochondrion, nucleus	37.5	48.65
KRH30848	Soybean	nucleus	57.64	48.26
KRH32726	Soybean	cytosol, nucleus, plastid	58.33	47.46
GSMUA_Achr1P19600_001	Banana	cytosol	46.53	47.18
PGSC0003DMT400072393	Potato	cytosol, nucleus, peroxisome	52.08	47.17
GSMUA_Achr7P06320_001	Banana	cytosol	47.22	46.58
AT3G52800.2	Thale cress	nucleus	54.86	46.47
Solyc09g009590.1.1	Tomato	cytosol	48.61	46.36
GSMUA_Achr9P07600_001	Banana	nucleus	45.14	46.1
PGSC0003DMT400006957	Potato	cytosol	47.92	46.0
Bra028533.1-P	Field mustard	cytosol, nucleus, plastid	59.72	45.99
PGSC0003DMT400050131	Potato	cytosol, nucleus, plastid	56.94	44.81
GSMUA_Achr9P17970_001	Banana	cytosol, mitochondrion, nucleus	43.75	44.68
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus, plastid	30.56	44.44
AT2G27580.1	Thale cress	cytosol, mitochondrion, nucleus	48.61	42.94
GSMUA_Achr7P01460_001	Banana	cytosol, nucleus, plastid	49.31	42.01
GSMUA_Achr2P12750_001	Banana	nucleus, peroxisome, plastid	48.61	41.42
Bra000505.1-P	Field mustard	cytosol, mitochondrion, nucleus	47.22	41.21
CDX83273	Canola	cytosol, mitochondrion, nucleus	47.22	40.96
GSMUA_Achr9P22330_001	Banana	cytosol	46.53	40.85
KRH30019	Soybean	cytosol	40.28	40.56
CDY31184	Canola	cytosol, mitochondrion, nucleus	47.22	40.24
GSMUA_Achr3P11070_001	Banana	nucleus	43.06	40.0
GSMUA_Achr9P19860_001	Banana	nucleus	43.06	40.0
KRH01118	Soybean	cytosol	40.97	39.6
GSMUA_Achr3P11830_001	Banana	plastid	27.78	39.22
EES03677	Sorghum	peroxisome, plastid	43.75	36.0
GSMUA_Achr5P25610_001	Banana	plastid	31.25	31.03
GSMUA_Achr11P...	Banana	nucleus	31.25	28.85
GSMUA_Achr3P19340_001	Banana	nucleus	29.17	28.77
GSMUA_Achr9P07860_001	Banana	nucleus	30.56	28.76
Os01t0765900-00	Rice	nucleus	48.61	19.72

Protein Annotations

MapMan:35.1	Gene3D:4.10.1110.10	InterPro:AN1-like_Znf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr6G17330_001	EnsemblPlants:GSMUA_Achr6P17330_001	EnsemblPlants:GSMUA_Achr6T17330_001
InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896	UniProt:M0T7T1	PFAM:PF01428	PFAM:PF01754
PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF43	SMART:SM00154	SMART:SM00259
SUPFAM:SSF118310	SUPFAM:SSF57716	UniParc:UPI0002957C3B	InterPro:Znf_A20	InterPro:Znf_AN1	SEG:seg

Description

Zinc finger A20 and AN1 domain-containing stress-associated protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G17330_001]

Coordinates

chr6:+:11671047..11671559

Molecular Weight (calculated)

15509.2 Da

IEP (calculated)

8.835

GRAVY (calculated)

-0.583

Length

144 amino acids

Sequence
(BLAST)

001: MAEEQRCQEG HRPCANNCGF FGSPATLNLC SKCYRDHRLK EEEKQQPQQA SSSSSSATAA EVGVEESLCA SSSSSPASFG PNRCAKCRKR VGLTAGFRCR
101: CGATYCGTHR HAEQHGCTFD FKAAGRAAIA RANPVVRAVK LHKI

Best Arabidopsis Sequence Match ( AT2G36320.1 )
(BLAST)

001: MAEEHRCETP EGHRLCVNNC GFFGSSATMN LCSNCYGDLC LKQQQQASMK STVESSLSPV IAPVLENYAA ELEIPTTKKT EEKKPIQIPT EQPSPPQRPN
101: RCTVCRKRVG LTGFMCRCGT TFCGSHRYPE VHGCTFDFKS AGREEIAKAN PLVIAAKLQK I

Arabidopsis Description

SAP4Zinc finger A20 and AN1 domain-containing stress-associated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJM6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.