Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67537 | Canola | cytosol, nucleus, plastid | 74.71 | 84.67 |
| CDY13347 | Canola | nucleus | 71.76 | 79.22 |
| CDY66222 | Canola | cytosol, nucleus, plastid | 74.71 | 77.91 |
| Bra019645.1-P | Field mustard | cytosol, nucleus, plastid | 74.71 | 77.91 |
| CDX95378 | Canola | cytosol, nucleus, plastid | 70.0 | 77.27 |
| Bra006949.1-P | Field mustard | cytosol, nucleus, plastid | 80.0 | 77.27 |
| CDX73602 | Canola | cytosol, nucleus, plastid | 72.94 | 77.02 |
| AT2G36320.1 | Thale cress | cytosol, nucleus, plastid | 68.82 | 72.67 |
| Bra028533.1-P | Field mustard | cytosol, nucleus, plastid | 77.06 | 70.05 |
| GSMUA_Achr3P22730_001 | Banana | cytosol, mitochondrion, nucleus | 48.82 | 61.03 |
| VIT_08s0007g03530.t01 | Wine grape | nucleus | 55.88 | 59.01 |
| KRH67896 | Soybean | cytosol, nucleus, plastid | 51.76 | 55.0 |
| KRG96184 | Soybean | cytosol, nucleus, plastid | 52.94 | 54.88 |
| GSMUA_Achr6P17330_001 | Banana | nucleus | 46.47 | 54.86 |
| KRH32726 | Soybean | cytosol, nucleus, plastid | 56.47 | 54.24 |
| KRH30848 | Soybean | nucleus | 53.53 | 52.91 |
| GSMUA_Achr8P07710_001 | Banana | cytosol, mitochondrion, nucleus | 46.47 | 52.32 |
| EES05173 | Sorghum | cytosol, mitochondrion, nucleus | 43.53 | 49.33 |
| KRH30019 | Soybean | cytosol | 39.41 | 46.85 |
| AT2G27580.1 | Thale cress | cytosol, mitochondrion, nucleus | 44.12 | 46.01 |
| PGSC0003DMT400050131 | Potato | cytosol, nucleus, plastid | 49.41 | 45.9 |
| Os02t0530300-01 | Rice | cytosol, nucleus, plastid | 40.59 | 44.81 |
| AT1G51200.2 | Thale cress | cytosol, nucleus, plastid | 44.12 | 43.35 |
| AT1G12440.2 | Thale cress | nucleus, plastid | 41.76 | 42.26 |
| AT4G12040.1 | Thale cress | cytosol, nucleus, plastid | 42.94 | 41.71 |
| AT4G22820.2 | Thale cress | cytosol, nucleus, plastid | 41.76 | 40.34 |
| AT4G14225.1 | Thale cress | cytosol, mitochondrion, plastid | 29.41 | 40.0 |
| AT4G25380.1 | Thale cress | nucleus | 28.82 | 37.69 |
| AT3G12630.1 | Thale cress | nucleus | 34.12 | 36.25 |
| EES03677 | Sorghum | peroxisome, plastid | 32.94 | 32.0 |
| Os01t0765900-00 | Rice | nucleus | 38.82 | 18.59 |
Protein Annotations
| MapMan:35.1 | Gene3D:4.10.1110.10 | EntrezGene:824446 | UniProt:A0A178VIF4 | ProteinID:AEE78995.1 | InterPro:AN1-like_Znf |
| ProteinID:ANM63890.1 | ArrayExpress:AT3G52800 | EnsemblPlantsGene:AT3G52800 | RefSeq:AT3G52800 | TAIR:AT3G52800 | RefSeq:AT3G52800-TAIR-G |
| EnsemblPlants:AT3G52800.2 | EMBL:AY042871 | EMBL:AY072524 | Unigene:At.22407 | ProteinID:CAB89241.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008270 | GO:GO:0009719 |
| GO:GO:0010200 | GO:GO:0046872 | InterPro:IPR000058 | InterPro:IPR002653 | InterPro:IPR035896 | RefSeq:NP_001325951.1 |
| RefSeq:NP_190848.1 | ProteinID:OAP05261.1 | PFAM:PF01428 | PFAM:PF01754 | PFscan:PS51036 | PFscan:PS51039 |
| PANTHER:PTHR10634 | PANTHER:PTHR10634:SF43 | UniProt:Q94B40 | SMART:SM00154 | SMART:SM00259 | SUPFAM:SSF118310 |
| SUPFAM:SSF57716 | UniParc:UPI000009D0FD | InterPro:Znf_A20 | InterPro:Znf_AN1 | SEG:seg | : |
Description
SAP6A20/AN1-like zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VIF4]
Coordinates
chr3:+:19569256..19570710
Molecular Weight (calculated)
18599.3 Da
IEP (calculated)
8.818
GRAVY (calculated)
-0.469
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEHRCQTP ESNRLCVNNC GFLGSSATMN LCSNCYGDLC LKQQQQSSSI KSTVESSLSV SPPSSSSSEI SSPIIPPLLK NPSVKLEVPE KKAVISLPTT
101: EQNQQQRPNR CTTCRKRVGL TGFKCRCGTM FCGVHRYPEI HGCSYDFKSA GREEIAKANP LVKAAKLQKI
101: EQNQQQRPNR CTTCRKRVGL TGFKCRCGTM FCGVHRYPEI HGCSYDFKSA GREEIAKANP LVKAAKLQKI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.