CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26566	Canola	nucleus	95.6	98.06
Bra026970.1-P	Field mustard	nucleus	94.97	97.42
AT1G12440.2	Thale cress	nucleus, plastid	82.39	77.98
CDX94483	Canola	plastid	62.26	60.74
CDX86725	Canola	nucleus, plastid	62.26	60.74
CDY03251	Canola	nucleus	52.2	58.87
CDY39818	Canola	nucleus	38.36	54.95
CDX67537	Canola	cytosol, nucleus, plastid	47.8	50.67
CDX79670	Canola	nucleus	47.8	50.33
CDY13347	Canola	nucleus	47.8	49.35
CDY04388	Canola	cytosol	21.38	49.28
CDX75051	Canola	cytosol, nucleus, plastid	49.06	47.85
CDX84135	Canola	cytosol, nucleus, plastid	44.65	47.65
CDX84565	Canola	cytosol, nucleus, plastid	47.17	46.88
CDX95378	Canola	cytosol, nucleus, plastid	45.28	46.75
CDY00455	Canola	cytosol	20.13	46.38
CDY66222	Canola	cytosol, nucleus, plastid	45.28	44.17
CDX73602	Canola	cytosol, nucleus, plastid	44.65	44.1
CDY51557	Canola	nucleus	58.49	42.86
CDY22831	Canola	cytosol, nucleus, plastid	44.03	41.67
CDY60839	Canola	nucleus, plastid	42.77	41.46
CDY25219	Canola	cytosol, nucleus, plastid	43.4	41.07
CDX83273	Canola	cytosol, mitochondrion, nucleus	42.77	40.96
CDY31184	Canola	cytosol, mitochondrion, nucleus	43.4	40.83
CDY65025	Canola	cytosol	32.7	40.0
CDX90265	Canola	cytosol	32.7	40.0
CDY57287	Canola	cytosol	32.7	38.24
CDY49709	Canola	cytosol	31.45	38.17
CDX92701	Canola	cytosol	31.45	37.04
CDY00788	Canola	cytosol, nucleus, plastid	34.59	35.48
CDY52666	Canola	nucleus	34.59	35.48
CDY50536	Canola	nucleus	34.59	35.26
CDY08419	Canola	nucleus	34.59	34.59
CDX73811	Canola	nucleus	34.59	34.59
CDY67538	Canola	nucleus	34.59	34.59
CDX98772	Canola	cytosol, extracellular, nucleus	62.26	33.9

Protein Annotations

MapMan:35.1	Gene3D:4.10.1110.10	GO:A0A078FNJ6	UniProt:A0A078FNJ6	InterPro:AN1-like_Znf	EnsemblPlants:CDY16005
ProteinID:CDY16005	ProteinID:CDY16005.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00090391001	InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896
PFAM:PF01428	PFAM:PF01754	PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF38
SMART:SM00154	SMART:SM00259	SUPFAM:SSF118310	SUPFAM:SSF57716	UniParc:UPI0004EBB3D5	InterPro:Znf_A20
InterPro:Znf_AN1	SEG:seg	:	:	:	:

Description

BnaC08g41180DBnaC08g41180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNJ6]

Coordinates

chrLK032060:-:163629..164481

Molecular Weight (calculated)

16863.6 Da

IEP (calculated)

8.093

GRAVY (calculated)

-0.681

Length

159 amino acids

Sequence
(BLAST)

001: MGSEQNDSFS PSEPKLCVNG CGFFGSPSNM NLCSKCYRDI RATEEQAASA KAAVDKSLNP NKHHTKPPQQ SLETAPEPSS SASGGDSSVA SSDPPRGTRC
101: LSCNKKVGVT GFKCRCGSTF CGAHRYPESH DCEFDFKGAA REAIAKANPV VKADKVEKI

Best Arabidopsis Sequence Match ( AT1G12440.2 )
(BLAST)

001: MGSEQNDSTS FSPSEPKLCV KGCGFFGSPS NMNLCSKCYR DIRATEEQTA SAKAAVEKSL NPNKPKTQPQ QSQEITQGVL GSGSSSSSTR GGDSAAAPLD
101: PPKSTATRCL SCNKKVGVTG FKCRCGSTFC GTHRYPESHE CQFDFKGVAR EAIAKANPVV KADKVDRI

Arabidopsis Description

SAP1Zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.