CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026970.1-P	Field mustard	nucleus	98.06	98.06
CDY16005	Canola	nucleus	98.06	95.6
AT1G12440.2	Thale cress	nucleus, plastid	83.87	77.38
CDX94483	Canola	plastid	63.87	60.74
CDX86725	Canola	nucleus, plastid	63.87	60.74
CDY03251	Canola	nucleus	53.55	58.87
CDY39818	Canola	nucleus	39.35	54.95
CDX67537	Canola	cytosol, nucleus, plastid	49.03	50.67
CDX79670	Canola	nucleus	49.03	50.33
CDY13347	Canola	nucleus	49.03	49.35
CDY04388	Canola	cytosol	21.94	49.28
CDX75051	Canola	cytosol, nucleus, plastid	50.32	47.85
CDX84135	Canola	cytosol, nucleus, plastid	45.81	47.65
CDX84565	Canola	cytosol, nucleus, plastid	48.39	46.88
CDX95378	Canola	cytosol, nucleus, plastid	46.45	46.75
CDY00455	Canola	cytosol	20.65	46.38
CDY66222	Canola	cytosol, nucleus, plastid	46.45	44.17
CDX73602	Canola	cytosol, nucleus, plastid	45.81	44.1
CDY51557	Canola	nucleus	60.0	42.86
CDY22831	Canola	cytosol, nucleus, plastid	44.52	41.07
CDX83273	Canola	cytosol, mitochondrion, nucleus	43.87	40.96
CDY60839	Canola	nucleus, plastid	43.23	40.85
CDY25219	Canola	cytosol, nucleus, plastid	43.87	40.48
CDY31184	Canola	cytosol, mitochondrion, nucleus	43.87	40.24
CDY65025	Canola	cytosol	33.55	40.0
CDX90265	Canola	cytosol	33.55	40.0
CDY57287	Canola	cytosol	33.55	38.24
CDY49709	Canola	cytosol	32.26	38.17
CDX92701	Canola	cytosol	32.26	37.04
CDY52666	Canola	nucleus	36.13	36.13
CDY50536	Canola	nucleus	36.13	35.9
CDY00788	Canola	cytosol, nucleus, plastid	35.48	35.48
CDY08419	Canola	nucleus	36.13	35.22
CDX73811	Canola	nucleus	36.13	35.22
CDY67538	Canola	nucleus	36.13	35.22
CDX98772	Canola	cytosol, extracellular, nucleus	63.87	33.9

Protein Annotations

MapMan:35.1	Gene3D:4.10.1110.10	GO:A0A078GMP1	UniProt:A0A078GMP1	InterPro:AN1-like_Znf	EnsemblPlants:CDY26566
ProteinID:CDY26566	ProteinID:CDY26566.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00035432001	InterPro:IPR000058	InterPro:IPR002653	InterPro:IPR035896
PFAM:PF01428	PFAM:PF01754	PFscan:PS51036	PFscan:PS51039	PANTHER:PTHR10634	PANTHER:PTHR10634:SF38
SMART:SM00154	SMART:SM00259	SUPFAM:SSF118310	SUPFAM:SSF57716	UniParc:UPI0004EDFA32	InterPro:Znf_A20
InterPro:Znf_AN1	SEG:seg	:	:	:	:

Description

BnaA09g47110DBnaA09g47110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMP1]

Coordinates

chrLK032192:-:175900..176367

Molecular Weight (calculated)

16535.3 Da

IEP (calculated)

8.089

GRAVY (calculated)

-0.672

Length

155 amino acids

Sequence
(BLAST)

001: MGSEQNDSFS PSEPKLCVNG CGFFGSPSNM NLCSKCYRDI RATEEQAASA KAAVDKSLNP NKPHTKPPQQ SLETAPEPSS SASVGDSSDP PRATRCLSCN
101: KKVGVTGFKC RCGSTFCGAH RYPESHDCEF DFKGAAREAI AKANPVVKAD KVEKI

Best Arabidopsis Sequence Match ( AT1G12440.2 )
(BLAST)

001: MGSEQNDSTS FSPSEPKLCV KGCGFFGSPS NMNLCSKCYR DIRATEEQTA SAKAAVEKSL NPNKPKTQPQ QSQEITQGVL GSGSSSSSTR GGDSAAAPLD
101: PPKSTATRCL SCNKKVGVTG FKCRCGSTFC GTHRYPESHE CQFDFKGVAR EAIAKANPVV KADKVDRI

Arabidopsis Description

SAP1Zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.