Factsheet for Bra028223.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017832.1-P	Field mustard	nucleus	99.22	100.0
Bra015203.1-P	Field mustard	plastid	82.17	98.15
CDY00455	Canola	cytosol	34.11	63.77
CDY04388	Canola	cytosol	31.78	59.42
Bra033124.1-P	Field mustard	nucleus, plastid	74.42	55.81
Bra029435.1-P	Field mustard	plastid	68.99	50.86
AT4G12040.1	Thale cress	cytosol, nucleus, plastid	66.67	49.14
Bra036643.1-P	Field mustard	nucleus	34.11	39.64
Bra026970.1-P	Field mustard	nucleus	46.51	38.71
Bra023869.1-P	Field mustard	plastid	43.41	38.36
Bra014276.1-P	Field mustard	cytosol	22.48	36.25
Bra005282.1-P	Field mustard	nucleus	34.88	27.95
Bra000505.1-P	Field mustard	cytosol, mitochondrion, nucleus	35.66	27.88
Bra010753.1-P	Field mustard	cytosol	27.91	27.69
Bra019645.1-P	Field mustard	cytosol, nucleus, plastid	34.88	27.61
Bra023061.1-P	Field mustard	cytosol, nucleus, plastid	34.11	27.5
Bra019354.1-P	Field mustard	cytosol, extracellular, nucleus	60.47	26.71
Bra006949.1-P	Field mustard	cytosol, nucleus, plastid	35.66	26.14
Bra019169.1-P	Field mustard	cytosol	26.36	25.95
Bra018900.1-P	Field mustard	cytosol, nucleus, plastid	32.56	25.0
Bra001461.1-P	Field mustard	nucleus	30.23	24.53
Bra038739.1-P	Field mustard	nucleus	28.68	23.72
Bra014278.1-P	Field mustard	nucleus	32.56	23.6
Bra034748.1-P	Field mustard	nucleus	28.68	23.27
Bra028533.1-P	Field mustard	cytosol, nucleus, plastid	33.33	22.99

Protein Annotations

EnsemblPlants:Bra028223.1	EnsemblPlants:Bra028223.1-P	EnsemblPlantsGene:Bra028223	Gene3D:4.10.1110.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0008270	GO:GO:0046872	InterPro:AN1-like_Znf	InterPro:IPR000058	InterPro:IPR035896	InterPro:Znf_AN1
PANTHER:PTHR10634	PANTHER:PTHR10634:SF38	PFAM:PF01428	PFscan:PS51039	SEG:seg	SMART:SM00154
SUPFAM:SSF118310	UniParc:UPI00025447A9	UniProt:M4EHF8	MapMan:35.1	:	:

Description

AT4G12040 (E=8e-036) | zinc finger (AN1-like) family protein

Coordinates

chrA04:+:6813237..6814354

Molecular Weight (calculated)

14428.1 Da

IEP (calculated)

8.669

GRAVY (calculated)

-0.920

Length

129 amino acids

Sequence
(BLAST)

001: MESREIVPGI FEKKKKKKGT TMNSEQNNST SFPPTEPELC DNRCAEPSSA PIATGQEEAE PSKPARTNRC FSCNKKAGVM GFKCKCGSTF CRSHRCPEKH
101: ECSFNFKEVG RDVIAKANHV IKEDKVERI

Best Arabidopsis Sequence Match ( AT4G12040.1 )
(BLAST)

001: MGSEENNSTS FPPTEPKLCD NGCGFFGSPS NMNLCSKCYR SLRAEEDQTA VAKAAVKNSL KLPSCSIIAP GQKHPLEIKP AHLETVVVTA EPSSVPVAAE
101: QDEAEPSRPV RPNNRCFSCN KKVGVMGFKC KCGSTFCGSH RYPEKHECSF DFKEVGRDAI AKANPLVKAD KVQRI

Arabidopsis Description

SAP7SAP7 [Source:UniProtKB/TrEMBL;Acc:A0A178V0G6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.