CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75016
CDX77159
CDX99372
CDX99412
CDY04768
CDY08401
CDY21400
CDY25761
CDY32983
CDY33188
CDY40293
CDY42404
CDY52874
CDY57389
CDY60020
CDY70943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37055.1	CDY04768	AT1G22920.1	21798944
AT5G37055.1	CDY21400	AT1G22920.1	21798944
AT5G37055.1	CDY25761	AT1G22920.1	21798944
AT5G37055.1	CDX75016	AT2G36740.1	17470967
AT5G37055.1	CDY33188	AT2G36740.1	17470967
AT5G37055.1	CDY08401	AT3G12810.1	17142478
AT5G37055.1	CDY52874	AT3G12810.1	17142478
AT5G37055.1	CDY08401	AT3G12810.1	17470967
AT5G37055.1	CDY52874	AT3G12810.1	17470967
AT5G37055.1	CDY42404	AT3G33520.1	17142478
AT5G37055.1	CDY42404	AT3G33520.1	17470967
AT5G37055.1	CDX77159	AT5G37055.1	17470967
AT5G37055.1	CDX99372	AT5G37055.1	17470967
AT5G37055.1	CDX99412	AT5G37055.1	17470967
AT5G37055.1	CDY32983	AT5G37055.1	17470967
AT5G37055.1	CDY40293	AT5G37055.1	17470967
AT5G37055.1	CDY57389	AT5G37055.1	17470967
AT5G37055.1	CDY60020	AT5G37055.1	17470967
AT5G37055.1	CDY70943	AT5G37055.1	17470967

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40293	Canola	mitochondrion	96.92	96.92
CDX99412	Canola	mitochondrion	95.38	95.38
CDX99372	Canola	mitochondrion	90.77	90.77
Bra032836.1-P	Field mustard	mitochondrion	93.85	46.92
CDY32983	Canola	mitochondrion	93.85	35.67
CDY57389	Canola	mitochondrion	92.31	35.09
CDY70943	Canola	nucleus	90.77	34.5
AT5G37055.1	Thale cress	mitochondrion	86.15	32.75
KRH30163	Soybean	nucleus	67.69	25.43
KRG98203	Soybean	nucleus	67.69	25.43
VIT_08s0007g08060.t01	Wine grape	mitochondrion	64.62	24.42
PGSC0003DMT400058037	Potato	nucleus	61.54	23.39
Solyc03g033480.2.1	Tomato	nucleus	60.0	22.81
Zm00001d052325_P001	Maize	cytosol, nucleus, plastid	58.46	21.97
Os03t0367800-01	Rice	cytosol, mitochondrion, nucleus	56.92	21.14
EES16500	Sorghum	cytosol, nucleus, plastid	55.38	20.81
TraesCS5A01G151300.1	Wheat	cytosol, nucleus, plastid	55.38	20.81
EES16499	Sorghum	mitochondrion	53.85	20.35
TraesCS5B01G149800.2	Wheat	cytosol, nucleus, plastid	53.85	20.23
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus	61.54	20.0
HORVU5Hr1G047490.2	Barley	plastid	55.38	19.35
TraesCS5D01G156400.2	Wheat	cytosol, mitochondrion, nucleus	55.38	19.05
CDY60020	Canola	cytosol	6.15	3.05
KXG22781	Sorghum	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDX77159	EnsemblPlantsGene:GSBRNA2T00127776001	ProteinID:CDX77159	ProteinID:CDX77159.1	SEG:seg	UniParc:UPI0004EF1F6B
MapMan:12.4.4.3	:	:	:	:	:

Description

BnaC04g39540D

Coordinates

chrLK031809:+:1551507..1551786

Molecular Weight (calculated)

7062.1 Da

IEP (calculated)

4.155

GRAVY (calculated)

-0.649

Length

65 amino acids

Sequence
(BLAST)

1: MANRRVSSRT RKVATKMVAA LTSTDNRTQA AVARLEALEN NNGALEVVDL NDDEEASLDE EDDLG

Best Arabidopsis Sequence Match ( AT5G37055.1 )
(BLAST)

001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A

Arabidopsis Description

SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.