Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70943 | Canola | nucleus | 80.92 | 61.99 |
| CDY32983 | Canola | mitochondrion | 80.15 | 61.4 |
| CDY57389 | Canola | mitochondrion | 79.39 | 60.82 |
| AT5G37055.1 | Thale cress | mitochondrion | 77.86 | 59.65 |
| Bra006766.1-P | Field mustard | nucleus | 77.1 | 59.06 |
| KXG22781 | Sorghum | plastid | 36.64 | 50.53 |
| KRG98203 | Soybean | nucleus | 61.83 | 46.82 |
| VIT_08s0007g08060.t01 | Wine grape | mitochondrion | 61.07 | 46.51 |
| KRH30163 | Soybean | nucleus | 61.07 | 46.24 |
| Solyc03g033480.2.1 | Tomato | nucleus | 58.02 | 44.44 |
| PGSC0003DMT400058037 | Potato | nucleus | 58.02 | 44.44 |
| EES16499 | Sorghum | mitochondrion | 56.49 | 43.02 |
| EES16500 | Sorghum | cytosol, nucleus, plastid | 56.49 | 42.77 |
| Os03t0367800-01 | Rice | cytosol, mitochondrion, nucleus | 55.73 | 41.71 |
| TraesCS5B01G149800.2 | Wheat | cytosol, nucleus, plastid | 54.96 | 41.62 |
| TraesCS5A01G151300.1 | Wheat | cytosol, nucleus, plastid | 54.96 | 41.62 |
| Zm00001d052325_P001 | Maize | cytosol, nucleus, plastid | 54.2 | 41.04 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 60.31 | 39.5 |
| HORVU5Hr1G047490.2 | Barley | plastid | 55.73 | 39.25 |
| TraesCS5D01G156400.2 | Wheat | cytosol, mitochondrion, nucleus | 51.91 | 35.98 |
| CDY40293 | Canola | mitochondrion | 3.05 | 6.15 |
| CDX99412 | Canola | mitochondrion | 3.05 | 6.15 |
| CDX99372 | Canola | mitochondrion | 3.05 | 6.15 |
| CDX77159 | Canola | mitochondrion | 3.05 | 6.15 |
Protein Annotations
| EnsemblPlants:CDY60020 | EnsemblPlantsGene:GSBRNA2T00028038001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR007529 |
| InterPro:Znf_HIT | PANTHER:PTHR13093 | PFAM:PF04438 | PFscan:PS51083 | ProteinID:CDY60020 | ProteinID:CDY60020.1 |
| SUPFAM:SSF144232 | UniParc:UPI0004EDCB3F | UniProt:A0A078J6E5 | MapMan:12.4.4.3 | : | : |
Description
BnaAnng16410DBnaAnng16410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6E5]
Coordinates
chrLK033832:+:22547..23185
Molecular Weight (calculated)
14807.1 Da
IEP (calculated)
10.269
GRAVY (calculated)
-0.384
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVIHETQIL KLRGIDHNRT FNHVLVCSGY VQKKQHKGSK RKTRQAKALE ARKAPKSFTE LLQEANLESL PSHVPTYLKA AVGPPSSSSR RHFCTVCGYI
101: AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
Arabidopsis Description
SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.