Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70943 | Canola | nucleus | 93.57 | 93.57 |
| CDY57389 | Canola | mitochondrion | 92.98 | 92.98 |
| CDY32983 | Canola | mitochondrion | 92.98 | 92.98 |
| Bra002649.1-P | Field mustard | mitochondrion | 92.4 | 92.4 |
| Bra006766.1-P | Field mustard | nucleus | 91.23 | 91.23 |
| CDX99412 | Canola | mitochondrion | 34.5 | 90.77 |
| CDX99372 | Canola | mitochondrion | 33.92 | 89.23 |
| CDY40293 | Canola | mitochondrion | 33.92 | 89.23 |
| Bra031327.1-P | Field mustard | mitochondrion | 33.92 | 89.23 |
| CDX77159 | Canola | mitochondrion | 32.75 | 86.15 |
| CDY60020 | Canola | cytosol | 59.65 | 77.86 |
| Bra032836.1-P | Field mustard | mitochondrion | 56.14 | 73.85 |
| KRG98203 | Soybean | nucleus | 73.68 | 72.83 |
| KRH30163 | Soybean | nucleus | 73.1 | 72.25 |
| VIT_08s0007g08060.t01 | Wine grape | mitochondrion | 71.93 | 71.51 |
| PGSC0003DMT400058037 | Potato | nucleus | 69.59 | 69.59 |
| Solyc03g033480.2.1 | Tomato | nucleus | 69.01 | 69.01 |
| EES16500 | Sorghum | cytosol, nucleus, plastid | 64.91 | 64.16 |
| Os03t0367800-01 | Rice | cytosol, mitochondrion, nucleus | 64.91 | 63.43 |
| EES16499 | Sorghum | mitochondrion | 63.74 | 63.37 |
| Zm00001d052325_P001 | Maize | cytosol, nucleus, plastid | 63.74 | 63.01 |
| TraesCS5A01G151300.1 | Wheat | cytosol, nucleus, plastid | 63.16 | 62.43 |
| TraesCS5B01G149800.2 | Wheat | cytosol, nucleus, plastid | 63.16 | 62.43 |
| HORVU5Hr1G047490.2 | Barley | plastid | 63.74 | 58.6 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus | 68.42 | 58.5 |
| TraesCS5D01G156400.2 | Wheat | cytosol, mitochondrion, nucleus | 61.4 | 55.56 |
| KXG22781 | Sorghum | plastid | 28.07 | 50.53 |
Protein Annotations
| MapMan:12.4.4.3 | EntrezGene:833676 | ProteinID:AED94142.1 | EMBL:AF378857 | EMBL:AK175306 | ArrayExpress:AT5G37055 |
| EnsemblPlantsGene:AT5G37055 | RefSeq:AT5G37055 | TAIR:AT5G37055 | RefSeq:AT5G37055-TAIR-G | EnsemblPlants:AT5G37055.1 | TAIR:AT5G37055.1 |
| Symbol:ATSWC6 | EMBL:AY050464 | ProteinID:BAB11357.1 | GO:GO:0000003 | GO:GO:0000812 | GO:GO:0003674 |
| GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016607 | GO:GO:0019538 | GO:GO:0030154 | GO:GO:0031063 |
| GO:GO:0031491 | GO:GO:0040007 | GO:GO:0042742 | GO:GO:0042802 | GO:GO:0042826 | GO:GO:0043486 |
| GO:GO:0046872 | GO:GO:0048638 | InterPro:IPR007529 | RefSeq:NP_568545.1 | PFAM:PF04438 | PO:PO:0000013 |
| PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51083 | PANTHER:PTHR13093 |
| UniProt:Q9FHW2 | UniParc:UPI000009E4CF | InterPro:Znf_HIT | SEG:seg | : | : |
Description
SWC6SWR1 complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW2]
Coordinates
chr5:-:14641442..14642513
Molecular Weight (calculated)
19137.7 Da
IEP (calculated)
8.393
GRAVY (calculated)
-0.645
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEMSNRRV SNRTRKVATK MAAALTSNDN RTQAAIARLE ALENDNGAIE VIDLNDDEEA SLDEDDDLGY LQKKQHKGSK RKTRQAKALE ARKAPKSFLE
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
101: LLQEANLESL PSHVPTYLKA AVGPPSSSSR RYFCSVCGYI AGYNCCLCGM RFCSIRCQNI HKDTRCQKFV A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.