Factsheet for Zm00001d011011_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027775_P001	Maize	cytosol, extracellular, mitochondrion, nucleus	30.84	81.9
Zm00001d009350_P001	Maize	cytosol	30.19	80.87
Zm00001d033146_P001	Maize	cytosol	29.22	77.59
Zm00001d009769_P001	Maize	cytosol, extracellular, nucleus	28.9	76.72
Zm00001d013300_P001	Maize	mitochondrion, nucleus	32.79	73.72
Zm00001d033979_P001	Maize	mitochondrion, nucleus	32.79	73.72
Zm00001d027760_P001	Maize	plastid	31.82	71.01
Zm00001d007567_P001	Maize	nucleus	26.3	61.36
HORVU1Hr1G035130.3	Barley	nucleus	31.17	56.14
Zm00001d052588_P001	Maize	cytosol, nucleus, plastid	32.14	50.25
Zm00001d025335_P001	Maize	cytosol	23.05	49.65
Zm00001d007553_P001	Maize	nucleus	26.62	43.16
Zm00001d015078_P001	Maize	endoplasmic reticulum, vacuole	22.4	31.08
Zm00001d031574_P001	Maize	endoplasmic reticulum	36.36	28.87

Protein Annotations

Gene3D:1.10.20.10	Gene3D:1.25.40.180	MapMan:12.1.2	UniProt:A0A1D6FVI7	ProteinID:AQK95455.1	InterPro:ARM-type_fold
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold
InterPro:Histone_H2A	InterPro:Histone_H2A/H2B/H3	InterPro:Histone_H2A_C	InterPro:IPR003891	InterPro:IPR009072	InterPro:IPR016021
InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf	PFAM:PF00125	PFAM:PF02847	PFAM:PF16211	PRINTS:PR00620
PFscan:PS51366	PANTHER:PTHR23430	PANTHER:PTHR23430:SF105	SMART:SM00414	SUPFAM:SSF47113	SUPFAM:SSF48371
UniParc:UPI0008455A65	EnsemblPlantsGene:Zm00001d011011	EnsemblPlants:Zm00001d011011_P001	EnsemblPlants:Zm00001d011011_T001	:	:

Description

Histone H2A variant 1

Coordinates

chr8:+:136569078..136571570

Molecular Weight (calculated)

33843.8 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.133

Length

308 amino acids

Sequence
(BLAST)

001: MLPVVAHSVQ IKGPQGLVPF FTSSIIGEPD DDEHLINLFS CRWLGPLSKW SMTSVNLGTF QDGDLLPNTQ TTMAKKGQYV KSQGSANSFE RKDLERELLA
101: KLLVYLCTAQ EHLLSQRQLL QGFQHVLSTL EDVVTDAPKA TKFLGQIFAR VVLEDGISLT EGGGLLQEWD GREEPAGQHA LEDSLASEDL GSMLESIRVE
201: RAKYSLMCFQ FPVGRIHRQL KQMTQANGRV GATASVYLAA ILEYLTAEVL ELAGNASKDL KVKRITPRHL HLAICGDEEL DTLIKGTIAG GGVIPHIHKS
301: LINKSSKE

Best Arabidopsis Sequence Match ( AT2G38810.2 )
(BLAST)

001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD

Arabidopsis Description

HTA8Probable histone H2A variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SII0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.