Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G075400.1 | Wheat | unclear | 77.42 | 83.92 |
| TraesCS6B01G049000.1 | Wheat | nucleus | 66.45 | 70.55 |
| TraesCS6B01G049200.1 | Wheat | nucleus | 65.81 | 69.86 |
| TraesCS6B01G049400.1 | Wheat | nucleus | 65.81 | 69.86 |
| TraesCS6B01G049500.1 | Wheat | nucleus | 65.81 | 69.86 |
| TraesCS6B01G048300.1 | Wheat | nucleus | 65.81 | 69.39 |
| TraesCS6B01G048700.1 | Wheat | nucleus | 65.81 | 69.39 |
| TraesCS3D01G521700.1 | Wheat | nucleus | 78.71 | 69.32 |
| TraesCS6B01G082400.1 | Wheat | nucleus | 65.16 | 69.18 |
| TraesCS2B01G239700.1 | Wheat | mitochondrion | 50.32 | 57.78 |
| TraesCS5B01G103600.1 | Wheat | nucleus | 50.32 | 56.93 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 40.65 | 45.32 |
| Solyc06g084430.2.1 | Tomato | plasma membrane | 25.81 | 41.24 |
| CDY51246 | Canola | plastid | 29.03 | 20.45 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS |
| InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 |
| PANTHER:PTHR23430:SF202 | SMART:SM00414 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS6B01G100100 | EnsemblPlants:TraesCS6B01G100100.1 | TIGR:cd00074 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:77989653..77990516
Molecular Weight (calculated)
16228.2 Da
IEP (calculated)
11.392
GRAVY (calculated)
-0.130
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARKGVARK KAVTRSVKAG LQFPVGRIGR YLKKGRYAQR VGSGAPVYLA AVLEYLAAEV LELAGDAAKE SKKARIILRH LMIAVQGDPE LSRLLAGVTI
101: AHGGVVPYIN SALLPKKKAA GAAEKFPKKT AAATKSPKKT AAATKSPKKK AAATN
101: AHGGVVPYIN SALLPKKKAA GAAEKFPKKT AAATKSPKKT AAATKSPKKK AAATN
001: MAGRGKTLGS GSAKKATTRS SKAGLQFPVG RIARFLKKGK YAERVGAGAP VYLAAVLEYL AAEVLELAGN AARDNKKTRI VPRHIQLAVR NDEELSKLLG
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD
101: DVTIANGGVM PNIHNLLLPK KTGASKPSAE DD
Arabidopsis Description
HTA10Probable histone H2A.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C681]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.