Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G239700.1 | Wheat | mitochondrion | 70.07 | 71.11 |
| TraesCS6B01G049000.1 | Wheat | nucleus | 64.96 | 60.96 |
| TraesCS6B01G049200.1 | Wheat | nucleus | 64.96 | 60.96 |
| TraesCS6B01G049400.1 | Wheat | nucleus | 64.96 | 60.96 |
| TraesCS6B01G049500.1 | Wheat | nucleus | 64.96 | 60.96 |
| TraesCS6B01G048300.1 | Wheat | nucleus | 64.96 | 60.54 |
| TraesCS6B01G048700.1 | Wheat | nucleus | 64.96 | 60.54 |
| TraesCS6B01G082400.1 | Wheat | nucleus | 64.23 | 60.27 |
| TraesCS1B01G154500.1 | Wheat | mitochondrion | 51.09 | 50.36 |
| TraesCS6B01G100100.1 | Wheat | nucleus | 56.93 | 50.32 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:12.1.2 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:Histone_H2A | InterPro:Histone_H2A/H2B/H3 | InterPro:Histone_H2A_C | InterPro:Histone_H2A_CS |
| InterPro:IPR009072 | PFAM:PF00125 | PFAM:PF16211 | PRINTS:PR00620 | ScanProsite:PS00046 | PANTHER:PTHR23430 |
| PANTHER:PTHR23430:SF197 | SMART:SM00414 | SUPFAM:SSF47113 | EnsemblPlantsGene:TraesCS5B01G103600 | EnsemblPlants:TraesCS5B01G103600.1 | TIGR:cd00074 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:138346116..138346632
Molecular Weight (calculated)
14294.5 Da
IEP (calculated)
11.099
GRAVY (calculated)
-0.107
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAGGGRGK GKAVSKTVSR SSKAGLQFPV GRIARYLKIG KYAQRVGAGA PVYLSAVLEY LAAEVLELAG NAARDNKKTR IVPRHIQLAV RNDEELSRLL
101: GAVTIAAGGV LPNIHTTLLP KKVGKGKGDI GSASQEF
101: GAVTIAAGGV LPNIHTTLLP KKVGKGKGDI GSASQEF
001: MSSGAGSGTT KGGRGKPKAT KSVSRSSKAG LQFPVGRIAR FLKAGKYAER VGAGAPVYLS AVLEYLAAEV LELAGNAARD NKKTRIVPRH IQLAVRNDEE
101: LSKLLGSVTI ANGGVLPNIH QTLLPSKVGK NKGDIGSASQ EF
101: LSKLLGSVTI ANGGVLPNIH QTLLPSKVGK NKGDIGSASQ EF
Arabidopsis Description
HTA3Probable histone H2AXb [Source:UniProtKB/Swiss-Prot;Acc:Q9S9K7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.