Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97337 | Soybean | extracellular | 31.53 | 55.83 |
| PGSC0003DMT400067932 | Potato | extracellular, vacuole | 45.41 | 50.0 |
| Solyc09g092180.2.1 | Tomato | cytosol | 46.59 | 47.71 |
| KRH31580 | Soybean | cytosol, nucleus | 42.35 | 46.27 |
| AT3G23910.1 | Thale cress | cytosol | 45.41 | 45.84 |
| CDX77476 | Canola | nucleus | 43.53 | 44.58 |
| GSMUA_Achr6P20770_001 | Banana | cytosol, endoplasmic reticulum | 30.59 | 40.5 |
| Os04t0379800-01 | Rice | cytosol | 34.59 | 36.03 |
| TraesCS2D01G279400.1 | Wheat | cytosol | 34.82 | 35.32 |
| TraesCS2A01G280600.1 | Wheat | cytosol | 34.59 | 35.08 |
| TraesCS2B01G297900.1 | Wheat | cytosol | 33.88 | 34.45 |
| EES12008 | Sorghum | cytosol | 27.53 | 29.25 |
| Zm00001d004020_P003 | Maize | cytosol | 28.24 | 27.52 |
| AT3G24255.7 | Thale cress | endoplasmic reticulum | 41.65 | 21.38 |
Protein Annotations
| ArrayExpress:VIT_05s0029g00640 | EMBL:FN594958 | EnsemblPlants:VIT_05s0029g00640.t01 | EnsemblPlantsGene:VIT_05s0029g00640 | EntrezGene:100245254 | EntrezGene:LOC100245254 |
| ncoils:Coil | PANTHER:PTHR36037 | ProteinID:CBI17273 | ProteinID:CBI17273.3 | RefSeq:XP_002263384 | RefSeq:XP_002263384.1 |
| SEG:seg | unigene:Vvi.18939 | UniParc:UPI000198348B | UniProt:D7SNP4 | wikigene:100245254 | wikigene:LOC100245254 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:-:15612760..15655148
Molecular Weight (calculated)
47918.8 Da
IEP (calculated)
4.657
GRAVY (calculated)
-0.319
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEAPAAGTM DLDTIRSRMS ELNRIHTNYS HISDSNPLDS RSLFQEFSHH LQSRVNQILS QYSDVESLEA DDLDAYLGHL KKELNLVESE NAKISNEIEA
101: LTRTYVEDSN QLESDLEVLK HSVDFVASQG LKRAEAGALV DYSSSVEDQL DSRTAHGDNN FEILDLNYQT QKNKITLKSL QDLDYTFKRF EAIEKIEDAL
201: TGLKVIDFEG NCIRLSLSTF IPNLEGLLCE EKIEAVNEPS ELNHELLIEV MDQSMELKNV EIFPNDVYLG EIIDAAKSSR KLFSHMSILE TRSSLEWFVR
301: KVQDKIILCA LRQSIVKGAN KSRHSLEYLD RDEIIVAHMV GGVDAYIKVC QGWPVSNNAL KLKSLKSSDQ QSKGISLSFL CKVEEMANSL DVSIRKNISS
401: FVDAIEEILV QQMQSKLHVV DVPGK
101: LTRTYVEDSN QLESDLEVLK HSVDFVASQG LKRAEAGALV DYSSSVEDQL DSRTAHGDNN FEILDLNYQT QKNKITLKSL QDLDYTFKRF EAIEKIEDAL
201: TGLKVIDFEG NCIRLSLSTF IPNLEGLLCE EKIEAVNEPS ELNHELLIEV MDQSMELKNV EIFPNDVYLG EIIDAAKSSR KLFSHMSILE TRSSLEWFVR
301: KVQDKIILCA LRQSIVKGAN KSRHSLEYLD RDEIIVAHMV GGVDAYIKVC QGWPVSNNAL KLKSLKSSDQ QSKGISLSFL CKVEEMANSL DVSIRKNISS
401: FVDAIEEILV QQMQSKLHVV DVPGK
001: MEEETHDGSL DLQEIRRRVK ELDFFPRNCR EEPVESCSSD YETLVVQDFV LQFEPKVKEI VEEYGDVDLL DVEDSDAYLE YLRNELQSVE AESAKVSEEI
101: ERLSQSHAQD SSRLQRDLEG LLLSLDSMSS QDVEKSKENQ PSSSSMEVCE VIDDDKFKMF ELENQMEEKR MILKSLEDLD SLRKRFDAAE QVEDALTGLK
201: VLEFDGNFIR LQLRTYIQKL DGFLGQHKFD HITEPSELIH ELLIYLKDKT TEITKFEMFP NDIYIGDIIE AADSFRQVRL HSAVLDTRSS VQWVVAKVQD
301: KIISTTLRKY IVMSSKTIRY TFEYYDKDET IVAHIAGGID AFLKVSDGWP LLNTPLKLAS LKNSDNQSKG ISLSLICKVE ELANSLDLET RQNLSGFMDA
401: IEKILVEQTR EELQSNKSSQ K
101: ERLSQSHAQD SSRLQRDLEG LLLSLDSMSS QDVEKSKENQ PSSSSMEVCE VIDDDKFKMF ELENQMEEKR MILKSLEDLD SLRKRFDAAE QVEDALTGLK
201: VLEFDGNFIR LQLRTYIQKL DGFLGQHKFD HITEPSELIH ELLIYLKDKT TEITKFEMFP NDIYIGDIIE AADSFRQVRL HSAVLDTRSS VQWVVAKVQD
301: KIISTTLRKY IVMSSKTIRY TFEYYDKDET IVAHIAGGID AFLKVSDGWP LLNTPLKLAS LKNSDNQSKG ISLSLICKVE ELANSLDLET RQNLSGFMDA
401: IEKILVEQTR EELQSNKSSQ K
Arabidopsis Description
HAPp48,5 protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:P92952]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.