Factsheet for AT3G24255.7

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
endoplasmic reticulum 5
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G23910.1	Thale cress	cytosol	41.79	82.19
CDX77476	Canola	nucleus	33.7	67.23
KRG97337	Soybean	extracellular	13.04	45.0
VIT_05s0029g00640.t01	Wine grape	cytosol	21.38	41.65
PGSC0003DMT400067932	Potato	extracellular, vacuole	18.96	40.67
KRH31580	Soybean	cytosol, nucleus	18.12	38.56
Solyc09g092180.2.1	Tomato	cytosol	19.2	38.31
TraesCS2B01G297900.1	Wheat	cytosol	15.7	31.1
Os04t0379800-01	Rice	cytosol	15.22	30.88
TraesCS2A01G280600.1	Wheat	cytosol	15.22	30.07
GSMUA_Achr6P20770_001	Banana	cytosol, endoplasmic reticulum	11.59	29.91
TraesCS2D01G279400.1	Wheat	cytosol	14.98	29.59
EES12008	Sorghum	cytosol	13.29	27.5
Zm00001d004020_P003	Maize	cytosol	13.41	25.46

Protein Annotations

MapMan:35.1	EntrezGene:822013	UniProt:A0A1I9LSY4	ProteinID:ANM65692.1	ArrayExpress:AT3G24255	EnsemblPlantsGene:AT3G24255
RefSeq:AT3G24255	TAIR:AT3G24255	RefSeq:AT3G24255-TAIR-G	EnsemblPlants:AT3G24255.7	Unigene:At.66479	ncoils:Coil
GO:GO:0000287	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003964	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0006278	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0010333	GO:GO:0016740	GO:GO:0016829	InterPro:IPR000477
RefSeq:NP_001327642.1	PFAM:PF00078	PFAM:PF13966	PFscan:PS50878	PANTHER:PTHR36037	InterPro:RT_dom
InterPro:RVT-Znf	SignalP:SignalP-noTM	UniParc:UPI0008496BB3	SEG:seg	:	:

Description

RNA-directed DNA polymerase (Reverse transcriptase)-related family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSY4]

Coordinates

chr3:+:8788854..8793368

Molecular Weight (calculated)

94509.5 Da

IEP (calculated)

7.840

GRAVY (calculated)

-0.269

Length

828 amino acids

Sequence
(BLAST)

001: MLIYWMLITH LCFADDLLVF TDGKKSSIEG ILQIFGKFAD FSGLQISLEK STIYMAGVKD NDKADILHSF PFASGALPVR YLGLPLLTKK MTTSDYGPLV
101: EKIRVRIGKW TARHLSFAGR LQLISSVIHS LTNFWMSAFR LPSACIKEID SICSSFLWSG PELNTKKAKV AWSDVCTPKD EGGLGIRSLK EANKVSLLKL
201: IWRMLSSTSL WVQWLRLYLL RKGSFWSISG NTTLGSWMWK KILKHRALAS GFVKHDIHNG SNTSFWFDNW SKIGRLIDVT GHRGCIDMGI TLHASVAEAV
301: VNHRPRRHRH DTLLRIEDVI AEVRHQGLTS GEDTVRWKGN GDIFKPCFNT KETWAATREP KLKVNWYKGV WFSHATPKYS VLAWIAIKNR LTTGDRMLSW
401: NAGADSSCVL CHHLVETRDH LFFTCPYSAE VPFLTRYTFQ LTLHSLWKER NGRRHGEVPQ AAAQMMKYES QIMVKLSDGN LTDAYLEYLR NELQSVEAES
501: AKVSEEIERL SQSHALDSSR LQRDLEGLLL SLDSMSSQDV EKSKENQPSS SSMEVCEVID DDKFKMFELE NQMEEKRMIL KSLEDLDSLR KRFDAAEQVE
601: DALTGLKVLE FDGNFIRLQL RTYIQKLDGF LGQHKFDHIT EPSELIHELL IYLKDKTTEI TKFEMFPNDI YIGDIIEAAD SFRQVRLHSA VLDTRSSVQW
701: VVAKVQDKII STTLRKDFVM SSKTIRYTFE YYDKDETIVA HIAGGIDAFL KVSDGWPLLN TPLKLASLKN SDNQSKGFSL SLISKLEELA NSLDLETRQN
801: LSGFMDAVEK ILVQQTREEL KSNESSQK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.