Subcellular Localization
min:
: max
Winner_takes_all: cytosol, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 3
- nucleus 1
- extracellular 2
- golgi 2
- plasma membrane 2
- vacuole 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97337 | Soybean | extracellular | 29.28 | 39.17 |
| VIT_05s0029g00640.t01 | Wine grape | cytosol | 40.5 | 30.59 |
| PGSC0003DMT400067932 | Potato | extracellular, vacuole | 35.83 | 29.79 |
| Os04t0379800-01 | Rice | cytosol | 34.89 | 27.45 |
| Solyc09g092180.2.1 | Tomato | cytosol | 34.58 | 26.75 |
| KRH31580 | Soybean | cytosol, nucleus | 32.4 | 26.74 |
| TraesCS2B01G297900.1 | Wheat | cytosol | 34.27 | 26.32 |
| TraesCS2D01G279400.1 | Wheat | cytosol | 34.27 | 26.25 |
| TraesCS2A01G280600.1 | Wheat | cytosol | 33.96 | 26.01 |
| CDX77476 | Canola | nucleus | 30.84 | 23.86 |
| AT3G23910.1 | Thale cress | cytosol | 31.15 | 23.75 |
| EES12008 | Sorghum | cytosol | 27.41 | 22.0 |
| Zm00001d004020_P003 | Maize | cytosol | 29.28 | 21.56 |
| AT3G24255.7 | Thale cress | endoplasmic reticulum | 29.91 | 11.59 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P20770_001 | EnsemblPlants:GSMUA_Achr6T20770_001 | EnsemblPlantsGene:GSMUA_Achr6G20770_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR36037 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295B123 | UniProt:M0T8S5 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G20770_001]
Coordinates
chr6:-:15538292..15550783
Molecular Weight (calculated)
37040.6 Da
IEP (calculated)
6.458
GRAVY (calculated)
-0.131
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHLDSPMLA RRNFQFYVIF FGSFVSFSFY YGLHHLSSSC PDNILLHRES HECPLHMLNE NKFEILDLNQ RIERSKENIN ILQDLDHALK RLEAVGHLEH
101: MFSDARVIDF QGSCIRLSLK TPIPNIDGFI SQHNLDFVEP FVSEHEMLIE VIDKTMELKS VEIFPDDVFI DGVVDTIKSS RYTAINFISS TTSSLGWFIR
201: QVQHRIVLCM LRRLLVKDAN KSRQYSDRDD TVTAHLVGGI DTFIKLAHGW PISSYPLKLL SIKNRDHQSK GISLSFLCKV KEMANSLDMQ SRLHLARFVD
301: AIEEILLQEM QSELHSNSMT A
101: MFSDARVIDF QGSCIRLSLK TPIPNIDGFI SQHNLDFVEP FVSEHEMLIE VIDKTMELKS VEIFPDDVFI DGVVDTIKSS RYTAINFISS TTSSLGWFIR
201: QVQHRIVLCM LRRLLVKDAN KSRQYSDRDD TVTAHLVGGI DTFIKLAHGW PISSYPLKLL SIKNRDHQSK GISLSFLCKV KEMANSLDMQ SRLHLARFVD
301: AIEEILLQEM QSELHSNSMT A
001: MDLLDSSRLQ RDLEGLLLSL DSMSSQDVEK SKENQPSSSS MEVCEVIDDD KFKMFELENQ MEEKRMILKS LEDLDSLRKR FDAAEQVEDA LTGLKVLEFD
101: GNFIRLQLRT YIQKLDGFLG QHKFDHITEP SELIHELLIY LKDKTTEITK FEMFPNDIYI GDIIEAADSF RQVRLHSAVL DTRSSVQWVV AKVQDKIIST
201: TLRKYIVMSS KTIRYTFEYY DKDETIVAHI AGGIDAFLKV SDGWPLLNTP LKLASLKNSD NQSKGISLSL ICKVEELANS LDLETRQNLS GFMDAIEKIL
301: VEQTREELQS NKSSQK
101: GNFIRLQLRT YIQKLDGFLG QHKFDHITEP SELIHELLIY LKDKTTEITK FEMFPNDIYI GDIIEAADSF RQVRLHSAVL DTRSSVQWVV AKVQDKIIST
201: TLRKYIVMSS KTIRYTFEYY DKDETIVAHI AGGIDAFLKV SDGWPLLNTP LKLASLKNSD NQSKGISLSL ICKVEELANS LDLETRQNLS GFMDAIEKIL
301: VEQTREELQS NKSSQK
Arabidopsis Description
HAPp48,5 protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:P92952]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.