CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97337	Soybean	extracellular	57.07	92.5
VIT_05s0029g00640.t01	Wine grape	cytosol	46.27	42.35
CDX77476	Canola	nucleus	40.1	37.59
PGSC0003DMT400067932	Potato	extracellular, vacuole	36.5	36.79
Solyc09g092180.2.1	Tomato	cytosol	38.05	35.66
AT3G23910.1	Thale cress	cytosol	38.56	35.63
GSMUA_Achr6P20770_001	Banana	cytosol, endoplasmic reticulum	26.74	32.4
TraesCS2D01G279400.1	Wheat	cytosol	31.36	29.12
TraesCS2A01G280600.1	Wheat	cytosol	31.11	28.88
TraesCS2B01G297900.1	Wheat	cytosol	30.85	28.71
Os04t0379800-01	Rice	cytosol	29.82	28.43
EES12008	Sorghum	cytosol	27.25	26.5
Zm00001d004020_P003	Maize	cytosol	28.02	25.0
AT3G24255.7	Thale cress	endoplasmic reticulum	38.56	18.12

Protein Annotations

EMBL:ACUP02007146	EnsemblPlants:KRH31580	EnsemblPlantsGene:GLYMA_11G255500	EntrezGene:100785081	ncoils:Coil	PANTHER:PTHR36037
ProteinID:KRH31580	ProteinID:KRH31580.1	SEG:seg	UniParc:UPI000233D6EA	UniProt:I1LN22	MapMan:35.2

Description

hypothetical protein

Coordinates

chr11:-:34552198..34555494

Molecular Weight (calculated)

44195.8 Da

IEP (calculated)

4.615

GRAVY (calculated)

-0.218

Length

389 amino acids

Sequence
(BLAST)

001: MVESGELRSR IAEIQKLCNA NDDELDNDSA LLHFKTALQQ IDSDFSSMEI QDAYLHHLKE ELNNLHLETA QVTNQIHLLS KTHNDDCILL EAKLGEIDCS
101: LDYNVTSKYQ KNTAEGIDSP MLADDCLNLT VANLDKNLEQ FELDNKIDEM KSVLNSLQNL QFTVKWFEVV EQIEDAFTGL KVLAFDENCI RLSLKTYMPT
201: FEGISYLPRI EATVDAAELN YELLIEVFEG TMRLKNVQVF PNDIYVNDIV DTAKLVSKSS LQWFIQKVQD RIILSTLRHL VVKDANKSRY SLEYLDKDKT
301: IVAHMAGGID AYIKLSHGWP IFGSPLKLIC IKGSDDLKRT SLSFHCKVEK LANSLDTHIR QNISSFVDAV EKVLMEQLQL DLRVGDNSG

Best Arabidopsis Sequence Match ( AT3G23910.1 )
(BLAST)

001: MEEETHDGSL DLQEIRRRVK ELDFFPRNCR EEPVESCSSD YETLVVQDFV LQFEPKVKEI VEEYGDVDLL DVEDSDAYLE YLRNELQSVE AESAKVSEEI
101: ERLSQSHAQD SSRLQRDLEG LLLSLDSMSS QDVEKSKENQ PSSSSMEVCE VIDDDKFKMF ELENQMEEKR MILKSLEDLD SLRKRFDAAE QVEDALTGLK
201: VLEFDGNFIR LQLRTYIQKL DGFLGQHKFD HITEPSELIH ELLIYLKDKT TEITKFEMFP NDIYIGDIIE AADSFRQVRL HSAVLDTRSS VQWVVAKVQD
301: KIISTTLRKY IVMSSKTIRY TFEYYDKDET IVAHIAGGID AFLKVSDGWP LLNTPLKLAS LKNSDNQSKG ISLSLICKVE ELANSLDLET RQNLSGFMDA
401: IEKILVEQTR EELQSNKSSQ K

Arabidopsis Description

HAPp48,5 protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:P92952]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.