Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77476 | Canola | nucleus | 74.11 | 75.18 |
| KRG97337 | Soybean | extracellular | 26.13 | 45.83 |
| VIT_05s0029g00640.t01 | Wine grape | cytosol | 45.84 | 45.41 |
| AT3G24255.7 | Thale cress | endoplasmic reticulum | 82.19 | 41.79 |
| PGSC0003DMT400067932 | Potato | extracellular, vacuole | 38.0 | 41.45 |
| Solyc09g092180.2.1 | Tomato | cytosol | 40.38 | 40.96 |
| KRH31580 | Soybean | cytosol, nucleus | 35.63 | 38.56 |
| TraesCS2B01G297900.1 | Wheat | cytosol | 32.3 | 32.54 |
| TraesCS2A01G280600.1 | Wheat | cytosol | 32.3 | 32.46 |
| Os04t0379800-01 | Rice | cytosol | 30.88 | 31.86 |
| TraesCS2D01G279400.1 | Wheat | cytosol | 31.12 | 31.26 |
| GSMUA_Achr6P20770_001 | Banana | cytosol, endoplasmic reticulum | 23.75 | 31.15 |
| EES12008 | Sorghum | cytosol | 25.89 | 27.25 |
| Zm00001d004020_P003 | Maize | cytosol | 27.08 | 26.15 |
Protein Annotations
| MapMan:35.2 | EntrezGene:821974 | ProteinID:AEE76831.1 | ArrayExpress:AT3G23910 | EnsemblPlantsGene:AT3G23910 | RefSeq:AT3G23910 |
| TAIR:AT3G23910 | RefSeq:AT3G23910-TAIR-G | EnsemblPlants:AT3G23910.1 | TAIR:AT3G23910.1 | EMBL:AY091054 | EMBL:AY117360 |
| ProteinID:BAB03008.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003964 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006278 | GO:GO:0006950 | GO:GO:0006979 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | RefSeq:NP_189033.1 | UniProt:P92952 | PO:PO:0000293 |
| PANTHER:PTHR36037 | UniParc:UPI00000AB087 | EMBL:Y09562 | SEG:seg | : | : |
Description
HAPp48,5 protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:P92952]
Coordinates
chr3:-:8636386..8639580
Molecular Weight (calculated)
48521.2 Da
IEP (calculated)
4.337
GRAVY (calculated)
-0.494
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEETHDGSL DLQEIRRRVK ELDFFPRNCR EEPVESCSSD YETLVVQDFV LQFEPKVKEI VEEYGDVDLL DVEDSDAYLE YLRNELQSVE AESAKVSEEI
101: ERLSQSHAQD SSRLQRDLEG LLLSLDSMSS QDVEKSKENQ PSSSSMEVCE VIDDDKFKMF ELENQMEEKR MILKSLEDLD SLRKRFDAAE QVEDALTGLK
201: VLEFDGNFIR LQLRTYIQKL DGFLGQHKFD HITEPSELIH ELLIYLKDKT TEITKFEMFP NDIYIGDIIE AADSFRQVRL HSAVLDTRSS VQWVVAKVQD
301: KIISTTLRKY IVMSSKTIRY TFEYYDKDET IVAHIAGGID AFLKVSDGWP LLNTPLKLAS LKNSDNQSKG ISLSLICKVE ELANSLDLET RQNLSGFMDA
401: IEKILVEQTR EELQSNKSSQ K
101: ERLSQSHAQD SSRLQRDLEG LLLSLDSMSS QDVEKSKENQ PSSSSMEVCE VIDDDKFKMF ELENQMEEKR MILKSLEDLD SLRKRFDAAE QVEDALTGLK
201: VLEFDGNFIR LQLRTYIQKL DGFLGQHKFD HITEPSELIH ELLIYLKDKT TEITKFEMFP NDIYIGDIIE AADSFRQVRL HSAVLDTRSS VQWVVAKVQD
301: KIISTTLRKY IVMSSKTIRY TFEYYDKDET IVAHIAGGID AFLKVSDGWP LLNTPLKLAS LKNSDNQSKG ISLSLICKVE ELANSLDLET RQNLSGFMDA
401: IEKILVEQTR EELQSNKSSQ K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.