Factsheet for Bra005500.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17169	Canola	cytosol	98.43	83.07
AT2G33385.2	Thale cress	cytosol	84.95	72.46
VIT_05s0049g01740.t01	Wine grape	cytosol	49.84	43.92
Solyc09g090550.2.1	Tomato	cytosol	47.02	40.11
PGSC0003DMT400044286	Potato	cytosol	46.08	39.2
KRG90360	Soybean	cytosol	27.9	37.4
KRH33620	Soybean	cytosol	42.32	34.53
TraesCS2B01G402000.2	Wheat	cytosol, mitochondrion	36.05	31.94
Os04t0512300-01	Rice	cytosol	36.68	31.79
TraesCS2D01G381700.2	Wheat	cytosol, mitochondrion	35.42	31.39
GSMUA_Achr1P00910_001	Banana	cytosol	33.54	31.01
TraesCS2A01G385000.1	Wheat	cytosol, mitochondrion	34.8	30.83
EES12487	Sorghum	nucleus	36.68	30.0
Bra023140.1-P	Field mustard	mitochondrion	28.21	28.12
Bra014893.1-P	Field mustard	mitochondrion	27.59	27.67
Zm00001d003039_P001	Maize	nucleus	28.53	22.14

Protein Annotations

MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	InterPro:ARPC2	InterPro:ARPC2/4	EnsemblPlantsGene:Bra005500	EnsemblPlants:Bra005500.1
EnsemblPlants:Bra005500.1-P	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005885	GO:GO:0008150
GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030041	GO:GO:0030833	GO:GO:0034314
InterPro:IPR034666	UniProt:M4CMR2	PFAM:PF04045	PANTHER:PTHR12058	PANTHER:PTHR12058:SF1	SUPFAM:SSF69645
UniParc:UPI00025473FF	:	:	:	:	:

Description

AT2G33385 (E=5e-065) arpc2b | arpc2b (actin-related protein C2B); structural molecule

Coordinates

chrA05:+:5824809..5827017

Molecular Weight (calculated)

36645.6 Da

IEP (calculated)

10.224

GRAVY (calculated)

-0.327

Length

319 amino acids

Sequence
(BLAST)

001: MQCSVLDTNI VYVSTSTLLE TQGIVTSKEI LSATYEVIKN IAVGVIDIVD PPRLGFQLTL KLHLDNIPRG KAAEAIKIIT RISEIQAIIL SSQLKEMLKR
101: LNFQDDSQAI NNNNRPIRIV YHPSEPFYVF RQAEKITAAF PMNFKDNSDV VIAMSFFQEL VEVGSQKEMG KAPQCSWSPV PPFQLRGEPV HDLTTNAGFV
201: SFDITSRHVE GKRLDKTVWN LLNFYAYVKY HIKRLNNTRF EEEAPQKENG ACKYVKELVK VPKGKLMMQQ RCKDMTRRVK ISKFRIRING CARFRFNQRW
301: ISIPKFSSKS SNKSYTKLD

Best Arabidopsis Sequence Match ( AT2G33385.2 )
(BLAST)

001: MAYLERASPT LKETLLKIYR AEKPIEVDQH FHEFGSIEYH IKYSVSDPNI VHVSTSTLLE TQGAVTLKEI SSYTYEVIKN IGVGVIDIVD PPRLGFQLTL
101: GLNLDNIPRG KEAIKIITRI SELQAIILSS QLKEMLRSLN FQDDSRSINN MPIRIVYHPS EPFYVFKQPE KITAVFPMNF KDNSDVVIAT SFFQELVEVG
201: SQKDMGKAPQ CSWSPIPPLQ LRGEPVQDLT TNSGFVSFDI TSRHIEGKRL DKTVWNLLNF YACAKYHIKC SRGYIQRRMR KRMETLVKLL NNTSLEEEAA
301: QNENGRCKYV KEFVKVPKGK LMMKQRCKEM TRRVKISKFR IKINGCARFR FNQRWISLPK FSSKPSDKSY TKLD

Arabidopsis Description

ARPC2BActin-related protein 2/3 complex subunit 2B [Source:UniProtKB/Swiss-Prot;Acc:F4IVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.