Factsheet for PGSC0003DMT400044286

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090550.2.1	Tomato	cytosol	91.2	91.44
VIT_05s0049g01740.t01	Wine grape	cytosol	64.27	66.57
KRG90360	Soybean	cytosol	35.47	55.88
KRH33620	Soybean	cytosol	57.33	54.99
AT2G33385.2	Thale cress	cytosol	50.13	50.27
CDY23743	Canola	cytosol	20.27	48.41
CDY17169	Canola	cytosol	48.0	47.62
GSMUA_Achr1P00910_001	Banana	cytosol	42.93	46.67
Bra005500.1-P	Field mustard	cytosol, nucleus, peroxisome	39.2	46.08
TraesCS2A01G385000.1	Wheat	cytosol, mitochondrion	40.8	42.5
TraesCS2B01G402000.2	Wheat	cytosol, mitochondrion	40.53	42.22
Os04t0512300-01	Rice	cytosol	41.33	42.12
TraesCS2D01G381700.2	Wheat	cytosol, mitochondrion	40.0	41.67
EES12487	Sorghum	nucleus	40.53	38.97
CDY37726	Canola	cytosol	17.33	37.79
PGSC0003DMT400067754	Potato	mitochondrion	29.07	33.23
Zm00001d003039_P001	Maize	nucleus	33.33	30.41

Protein Annotations

EntrezGene:102603304	MapMan:20.2.2.1.4	Gene3D:3.30.1460.20	InterPro:ARPC2	InterPro:ARPC2/4	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005885	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629
GO:GO:0016043	GO:GO:0030041	GO:GO:0030833	GO:GO:0034314	InterPro:IPR034666	UniProt:M1BFY5
PFAM:PF04045	EnsemblPlantsGene:PGSC0003DMG400017199	PGSC:PGSC0003DMG400017199	EnsemblPlants:PGSC0003DMT400044286	PANTHER:PTHR12058	PANTHER:PTHR12058:SF1
SUPFAM:SSF69645	UniParc:UPI000296B177	RefSeq:XP_006354443.1	:	:	:

Description

ARPC2B [Source:PGSC_GENE;Acc:PGSC0003DMG400017199]

Coordinates

chr9:+:56893868..56899787

Molecular Weight (calculated)

43676.5 Da

IEP (calculated)

10.439

GRAVY (calculated)

-0.354

Length

375 amino acids

Sequence
(BLAST)

001: MACFERASPA LKEILLRLYR DERAIDADHH LHEFGSVEYY IQSLVSDPDH TYLSIATPIL SQAFLVSTRL SRYTIQKVKA ISAEVVEIVE PPKEGYQLTI
101: RLNFARMPHG KESIKMITDI AAVQGVILSS QLEEMLMNVN SQDVAQGMYK PIKLVYHPRE PFYVIKQPQK ITAVFPMRFK EKTDVIIATT FFQQELMDVA
201: NTKACAKAPH CIWSPIPPPE LRGEAIEDLS TNGGFVSFDI TSRHIEGKRL DKTVWNLLNF YAFVKNHVKS TRGFIQRRMR TCLKSLVEVL QKTGPQDEQQ
301: IKEVKGYKRM KKLVKFTKFK IIRYRSDFTS KLKRIRSRLK IHGFNRFRRK WLTFPIFSSK TKYRKLEKDI SLQHN

Best Arabidopsis Sequence Match ( AT2G33385.2 )
(BLAST)

001: MAYLERASPT LKETLLKIYR AEKPIEVDQH FHEFGSIEYH IKYSVSDPNI VHVSTSTLLE TQGAVTLKEI SSYTYEVIKN IGVGVIDIVD PPRLGFQLTL
101: GLNLDNIPRG KEAIKIITRI SELQAIILSS QLKEMLRSLN FQDDSRSINN MPIRIVYHPS EPFYVFKQPE KITAVFPMNF KDNSDVVIAT SFFQELVEVG
201: SQKDMGKAPQ CSWSPIPPLQ LRGEPVQDLT TNSGFVSFDI TSRHIEGKRL DKTVWNLLNF YACAKYHIKC SRGYIQRRMR KRMETLVKLL NNTSLEEEAA
301: QNENGRCKYV KEFVKVPKGK LMMKQRCKEM TRRVKISKFR IKINGCARFR FNQRWISLPK FSSKPSDKSY TKLD

Arabidopsis Description

ARPC2BActin-related protein 2/3 complex subunit 2B [Source:UniProtKB/Swiss-Prot;Acc:F4IVU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.