CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH41049
KRH54078
KRH59722
KRH63883

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39450.1	KRH41049	AT5G51010.1	21798944
AT2G39450.1	KRH54078	AT5G51010.1	21798944
AT2G39450.1	KRH59722	AT5G51010.1	21798944
AT2G39450.1	KRH63883	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70520	Soybean	cytosol	98.23	98.23
CDY20439	Canola	endoplasmic reticulum, extracellular	28.03	90.24
CDY20436	Canola	endoplasmic reticulum, extracellular	28.03	90.24
AT2G39450.1	Thale cress	cytosol, peroxisome, plasma membrane	83.08	83.5
VIT_13s0019g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	84.09	83.46
CDY53587	Canola	cytosol, nucleus, peroxisome	82.32	83.38
Solyc05g054730.2.1	Tomato	cytosol, peroxisome, plasma membrane	84.09	83.04
Bra005039.1-P	Field mustard	cytosol, nucleus, peroxisome	76.26	82.97
PGSC0003DMT400060460	Potato	cytosol, peroxisome, plasma membrane	83.59	82.54
Bra017071.1-P	Field mustard	nucleus	80.81	81.22
CDY07013	Canola	cytosol	81.06	81.06
CDX93260	Canola	cytosol	80.81	80.81
GSMUA_Achr9P03180_001	Banana	cytosol, peroxisome, plasma membrane	79.29	79.49
HORVU1Hr1G071930.2	Barley	cytosol	78.28	76.73
TraesCS3A01G355500.2	Wheat	cytosol, peroxisome, plasma membrane	78.03	76.49
HORVU3Hr1G086970.1	Barley	cytosol, peroxisome, plasma membrane	77.02	76.44
TraesCS1D01G286000.1	Wheat	cytosol, peroxisome, plasma membrane	78.54	76.41
TraesCS3B01G388400.1	Wheat	cytosol, peroxisome, plasma membrane	77.78	76.24
TraesCS1A01G287100.1	Wheat	cytosol, peroxisome, plasma membrane	78.28	76.17
TraesCS3D01G349500.1	Wheat	cytosol, peroxisome, plasma membrane	77.53	75.99
TraesCS1B01G296500.1	Wheat	cytosol, peroxisome, plasma membrane	78.28	75.98
EES03850	Sorghum	cytosol, peroxisome, plasma membrane	78.28	75.79
Os01t0837800-01	Rice	cytosol	78.79	75.18
Zm00001d042939_P002	Maize	cytosol, peroxisome, plasma membrane	77.78	73.16
Os05t0461900-00	Rice	cytosol	68.69	72.34
CDY20438	Canola	cytosol	39.9	68.4
GSMUA_Achr5P29180_001	Banana	plasma membrane	77.53	67.92
CDY20435	Canola	cytosol, mitochondrion, nucleus, peroxisome	39.9	58.52
KRG98100	Soybean	plasma membrane	42.42	57.14
KRH43692	Soybean	cytosol, peroxisome, plasma membrane	57.07	57.07
KRH13762	Soybean	cytosol, mitochondrion, peroxisome, plasma membrane	57.07	57.07
KRH37933	Soybean	cytosol	58.84	56.83
KRH13763	Soybean	cytosol, peroxisome, plasma membrane	56.82	56.68
KRH38261	Soybean	cytosol, peroxisome, plasma membrane	55.81	55.25
KRG98101	Soybean	cytosol	8.08	55.17
KRH43691	Soybean	cytosol	40.91	50.47
KRG95425	Soybean	endoplasmic reticulum, golgi, plasma membrane	43.43	48.18
KRH67095	Soybean	cytosol	48.23	47.99
KRH17220	Soybean	cytosol, peroxisome, plasma membrane	44.44	44.9
KRH72855	Soybean	cytosol, endoplasmic reticulum, peroxisome	41.16	38.26

Protein Annotations

Gene3D:1.20.1510.10	EntrezGene:100776339	MapMan:24.2.9.2.2	Gene3D:3.30.70.1350	EMBL:ACUP02011521	InterPro:Cation_efflux
InterPro:Cation_efflux_CTD	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	EnsemblPlantsGene:GLYMA_18G286100	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:0098655	UniProt:I1N523	InterPro:IPR027469	InterPro:IPR036837
EnsemblPlants:KRH01581	ProteinID:KRH01581	ProteinID:KRH01581.1	PFAM:PF01545	PFAM:PF16916	PANTHER:PTHR43840
PANTHER:PTHR43840:SF5	SUPFAM:SSF160240	SUPFAM:SSF161111	TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI000233F125
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:56628728..56632642

Molecular Weight (calculated)

44917.0 Da

IEP (calculated)

4.879

GRAVY (calculated)

0.014

Length

396 amino acids

Sequence
(BLAST)

001: MVEPVELRCE EQLSLLSDSS NGDRSWRLNF DGFQLSSEHA EKQVKPPRGL HDCYGVLGQE DNIAEYYQQQ VEVLEGFTEM DALAERGFIP GMSKEERDKL
101: ARSETFAIRV SNAANMVLFV AKVYASIRSG SLAIIASTLD SLLDLLSGFI LWFTAFSMQT PNPYQYPIGK KRMQPLGILV FASVMATLGL QIILESTRTL
201: ISSENAFNLT KEQERWVVGI MLSVTLVKFL LMIYCRSFTN EIIKAYAQDH FFDVITNIIG LIAALLANYV DDWMDPVGAI ILALYTIRTW SMTVLENVNS
301: LVGRSAAPEY LQKLTYLCWN HHKAVRHIDT VRAYTFGSHY FVEVDIVLPS DMPLQEAHDI GESLQEKLEL LPEIERAFVH LDYEYSHKPE HAQAHS

Best Arabidopsis Sequence Match ( AT2G39450.1 )
(BLAST)

001: MVEPASPDSD EGISLLEFHG NGDRSWQLNF DDFQVSPEHK EKKSPSKLHN CLGCLGPEDN VADYYQQQVE MLEGFTEMDE LAERGFVPGM SKEEQDNLAK
101: SETLAIRISN IANMLLFAAK VYASVTSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN PYQYPIGKKR MQPLGILVFA SVMATLGLQI ILESLRTMLS
201: SHKEFNLTKE QESWVVGIML SVTLVKLLLV LYCRSFTNEI VKAYAQDHFF DVITNIIGLI AVILANYIDY WIDPVGAIIL ALYTIRTWSM TVLENVNSLV
301: GKSARPEYLQ KLTYLCWNHH KAIRHIDTVR AYTFGSHYFV EVDIVLPADM PLQVAHDIGE SLQEKLELLE EIERAFVHLD YEYTHKPEHA RSHC

Arabidopsis Description

MTP11MTP11 [Source:UniProtKB/TrEMBL;Acc:A0A178VPD8]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.