CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84893
CDY45796

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39450.1	CDX84893	AT5G51010.1	21798944
AT2G39450.1	CDY45796	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20436	Canola	endoplasmic reticulum, extracellular	100.0	100.0
CDY51006	Canola	golgi, plasma membrane	69.92	39.45
Bra005039.1-P	Field mustard	cytosol, nucleus, peroxisome	99.19	33.52
CDY53587	Canola	cytosol, nucleus, peroxisome	99.19	31.2
AT2G39450.1	Thale cress	cytosol, peroxisome, plasma membrane	95.94	29.95
CDX93260	Canola	cytosol	94.31	29.29
CDY07013	Canola	cytosol	94.31	29.29
KRH01581	Soybean	cytosol	90.24	28.03
KRH70520	Soybean	cytosol	90.24	28.03
Solyc05g054730.2.1	Tomato	cytosol, peroxisome, plasma membrane	89.43	27.43
VIT_13s0019g00020.t01	Wine grape	cytosol, peroxisome, plasma membrane	88.62	27.32
PGSC0003DMT400060460	Potato	cytosol, peroxisome, plasma membrane	88.62	27.18
GSMUA_Achr9P03180_001	Banana	cytosol, peroxisome, plasma membrane	86.18	26.84
Os05t0461900-00	Rice	cytosol	80.49	26.33
HORVU3Hr1G086970.1	Barley	cytosol, peroxisome, plasma membrane	85.37	26.32
TraesCS3A01G355500.2	Wheat	cytosol, peroxisome, plasma membrane	86.18	26.24
TraesCS3D01G349500.1	Wheat	cytosol, peroxisome, plasma membrane	86.18	26.24
TraesCS3B01G388400.1	Wheat	cytosol, peroxisome, plasma membrane	85.37	25.99
TraesCS1A01G287100.1	Wheat	cytosol, peroxisome, plasma membrane	85.37	25.8
TraesCS1D01G286000.1	Wheat	cytosol, peroxisome, plasma membrane	85.37	25.8
HORVU1Hr1G071930.2	Barley	cytosol	84.55	25.74
TraesCS1B01G296500.1	Wheat	cytosol, peroxisome, plasma membrane	85.37	25.74
Os01t0837800-01	Rice	cytosol	85.37	25.3
EES03850	Sorghum	cytosol, peroxisome, plasma membrane	82.93	24.94
Zm00001d042939_P002	Maize	cytosol, peroxisome, plasma membrane	82.93	24.23
GSMUA_Achr5P29180_001	Banana	plasma membrane	82.93	22.57
CDX81760	Canola	plasma membrane	69.11	22.37
CDY35081	Canola	cytosol, peroxisome, plasma membrane, plastid	69.11	21.25
CDY33342	Canola	cytosol, peroxisome, plasma membrane, plastid	69.11	21.25
CDX88546	Canola	cytosol	68.29	20.9
CDX87376	Canola	cytosol	68.29	20.9
CDY61375	Canola	golgi	34.96	20.09
CDY67929	Canola	cytosol	62.6	19.01
CDX88969	Canola	cytosol, peroxisome, plasma membrane	62.6	19.01
CDY06055	Canola	cytosol, peroxisome, plasma membrane	62.6	18.78
CDX71976	Canola	cytosol, peroxisome, plasma membrane	62.6	18.78
CDY57242	Canola	cytosol	60.16	18.05
CDY56242	Canola	cytosol, peroxisome, plasma membrane	59.35	17.8
CDY20438	Canola	cytosol	3.25	1.73
CDY20435	Canola	cytosol, mitochondrion, nucleus, peroxisome	3.25	1.48
CDX88395	Canola	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY20439	EnsemblPlantsGene:GSBRNA2T00012510001	Gene3D:3.30.70.1350	GO:A0A078G4S9	InterPro:Cation_efflux_CTD	InterPro:Cation_efflux_CTD_sf
InterPro:IPR036837	PANTHER:PTHR43840	PANTHER:PTHR43840:SF5	PFAM:PF16916	ProteinID:CDY20436.1	ProteinID:CDY20439
ProteinID:CDY20439.1	SEG:seg	SUPFAM:SSF160240	UniParc:UPI0004EEA567	UniProt:A0A078G4S9	MapMan:24.2.9.2.2

Description

BnaC04g06050DBnaC04g06050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4S9]

Coordinates

chrLK032108:+:44206..44695

Molecular Weight (calculated)

14231.1 Da

IEP (calculated)

6.219

GRAVY (calculated)

-0.171

Length

123 amino acids

Sequence
(BLAST)

001: MDPVGAIILA LYTIRTWSMT VLENVNSLVG KTATPEYPQK LTYLCWNHHK AIRHIDTVRA YTFGSHYFVE VDIVLPADMP LQVAHDIGES LQEKLELLQE
101: IERAFVHLDY EYTHKPEHAR SHC

Best Arabidopsis Sequence Match ( AT1G16310.1 )
(BLAST)

001: MPLNSYIFFL FLTTSPRNTF FGIRTHSDRI MATEHITRTG DEYNVELLPS DDDAPPLESS WRLNLDAFQL PSSTGGRHDG RTRFSRYFRT PRKERRVSEY
101: YKKQERLLEG FNEMETIHEN GFASGVPTEE EMKKLAKSER LAVHISNATN LVLFVAKVYA SMESRSMAVI ASTLDSLLDL LSGFILWFTA NAMRKPNQFH
201: YPIGKRRMQP VGIIVFASVM ATLGLQVLLE SGRQLVAKSG IHMNSTEEKW MIGIMVSVTI VKFLLMLYCR GFQNEIVRAY AQDHLFDVVT NSIGLATAVL
301: AVKFYWWIDP TGAILIALYT IATWARTVLE NVHSLIGRSA PPDFLAKLTF LIWNHHEQIK HIDTVRAYTF GSHYFVEVDI VLPEDMRLQE AHNIGETLQE
401: KLEQLAEVER AFVHIDFEFT HRPEHKCN

Arabidopsis Description

MTP10Metal tolerance protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q0WU02]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.