CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87376	Canola	cytosol	98.76	98.76
AT1G79520.2	Thale cress	peroxisome	93.28	90.58
CDY51006	Canola	golgi, plasma membrane	48.26	88.99
CDY33342	Canola	cytosol, peroxisome, plasma membrane, plastid	86.32	86.75
CDY35081	Canola	cytosol, peroxisome, plasma membrane, plastid	86.07	86.5
CDX81760	Canola	plasma membrane	77.61	82.11
CDY61375	Canola	golgi	41.29	77.57
Solyc12g017350.1.1	Tomato	cytosol, peroxisome, plasma membrane	58.21	74.05
VIT_18s0041g00090.t01	Wine grape	peroxisome	68.66	70.41
GSMUA_Achr10P...	Banana	peroxisome	64.93	68.87
CDY20436	Canola	endoplasmic reticulum, extracellular	20.9	68.29
CDY20439	Canola	endoplasmic reticulum, extracellular	20.9	68.29
Solyc10g005500.2.1	Tomato	cytosol	68.16	66.5
TraesCS3D01G038000.3	Wheat	cytosol	64.18	65.82
GSMUA_Achr8P18410_001	Banana	cytosol	65.92	65.76
TraesCS3B01G040900.3	Wheat	cytosol, peroxisome, plasma membrane	64.18	65.65
Zm00001d040002_P001	Maize	cytosol, peroxisome, plasma membrane	64.18	65.48
GSMUA_Achr6P09720_001	Banana	peroxisome	63.68	65.31
Os01t0130000-01	Rice	cytosol	63.43	65.22
TraesCS3A01G042600.1	Wheat	cytosol, peroxisome, plasma membrane	63.18	64.96
VIT_19s0085g00650.t01	Wine grape	cytosol, peroxisome, plasma membrane	64.18	64.5
KXG31976	Sorghum	cytosol	62.94	64.05
PGSC0003DMT400029243	Potato	cytosol, peroxisome, plasma membrane	67.91	60.8
PGSC0003DMT400024996	Potato	cytosol, peroxisome, plasma membrane, plastid	52.99	60.51
CDY07013	Canola	cytosol	57.21	58.08
CDY53587	Canola	cytosol, nucleus, peroxisome	56.47	58.06
CDX93260	Canola	cytosol	56.72	57.58
CDX88395	Canola	endoplasmic reticulum, extracellular	19.15	56.2
KRG98101	Soybean	cytosol	7.71	53.45
CDY06055	Canola	cytosol, peroxisome, plasma membrane	49.5	48.54
CDY20438	Canola	cytosol	27.86	48.48
CDX71976	Canola	cytosol, peroxisome, plasma membrane	49.01	48.05
CDY56242	Canola	cytosol, peroxisome, plasma membrane	47.76	46.83
CDX88969	Canola	cytosol, peroxisome, plasma membrane	47.01	46.67
CDY67929	Canola	cytosol	46.77	46.42
CDY57242	Canola	cytosol	47.26	46.34
CDY20435	Canola	cytosol, mitochondrion, nucleus, peroxisome	28.36	42.22

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.2	Gene3D:3.30.70.1350	GO:A0A078DH30	EnsemblPlants:CDX88546	ProteinID:CDX88546
ProteinID:CDX88546.1	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD	InterPro:Cation_efflux_CTD_sf	InterPro:Cation_efflux_TMD_sf	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0008324
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00148106001	InterPro:IPR027469	InterPro:IPR036837
PFAM:PF01545	PFAM:PF16916	PANTHER:PTHR43840	PANTHER:PTHR43840:SF2	SUPFAM:SSF160240	SUPFAM:SSF161111
TIGRFAMs:TIGR01297	TMHMM:TMhelix	UniParc:UPI0004EC09B7	SEG:seg	:	:

Description

BnaC06g39900D

Coordinates

chrLK031855:-:1588580..1591074

Molecular Weight (calculated)

45791.2 Da

IEP (calculated)

7.317

GRAVY (calculated)

-0.118

Length

402 amino acids

Sequence
(BLAST)

001: METTKEHHLG VSGQDYIVDL LPNDDDDRSS PPSSWRLSLD TFRLPSSSPL SSRRTRLSRY LRTPKKERKV SEYYKKQEKL LEGFNEMETI NETGFVSGAP
101: SEEELKKLAK SERLAVNISN AANLVLFVAK VYASVESRSM AVIASTLDSL LDLLSGFILW FTANAMSKPN HFHYPIGKRR MQPVGIIVFA SVMATLGLQV
201: LLESTRLLVS KNGPHMSSTE EKWMIGIMAS ATVIKFLLML YCRSFQNEIV RAYAQDHLFD VVTNSVGLAT AVLAVKFYWW IDPSGAILIA LYTISTWART
301: VLENVHSLIG RSAPPDFLAK LTFLIWNHHE KIKHIDTVRA YTFGSHYFVE VDIVLPEDMR LHEAHNIGET LQEKLEQLSE VERAFVHIDF EFTHRPEHKY
401: KV

Best Arabidopsis Sequence Match ( AT1G79520.1 )
(BLAST)

001: MAATEHRGLS GGDYNVDLLP IDQDDSPPSS WRLSLDTFRL PSSSPLSSGR HNGRTRLSRY LRTPKKERKV SEYYKQQEKL LEGFNEMETI NETGFVSGAP
101: TEEELKKLAK SERLAVHISN AANLVLFVAK VYASVESRSM AVIASTLDSL LDLLSGFILW FTANAMRTPN NFRYPIGKRR MQPVGIIVFA SVMATLGLQV
201: ILESTRLLVS KNGSHMSSTE EKWMIGIMAS ATVVKFLLML YCRSFQNEIV RAYAQDHLFD VITNSVGLAT AVLAVKFYWW IDPSGAILIA LYTISTWART
301: VLENVHSLIG RSAPPDFLAK LTFLIWNHHE KIKHIDTVRA YTFGSHYFVE VDIVLPEDMR LHEAHNIGET LQEKLEQLSE VERAFVHIDF EFTHRPEHKC
401: KV

Arabidopsis Description

Cation efflux family protein [Source:UniProtKB/TrEMBL;Acc:F4IF62]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.