Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39450.1 | CDX84893 | AT5G51010.1 | 21798944 |
| AT2G39450.1 | CDY45796 | AT5G51010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 100.0 | 85.56 |
| CDY53587 | Canola | cytosol, nucleus, peroxisome | 81.82 | 48.34 |
| AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 80.95 | 47.46 |
| CDY07013 | Canola | cytosol | 80.52 | 46.97 |
| CDX93260 | Canola | cytosol | 80.09 | 46.72 |
| Bra005039.1-P | Field mustard | cytosol, nucleus, peroxisome | 71.86 | 45.6 |
| KRH70520 | Soybean | cytosol | 68.83 | 40.15 |
| VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 69.26 | 40.1 |
| KRH01581 | Soybean | cytosol | 68.4 | 39.9 |
| PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 68.4 | 39.4 |
| Solyc05g054730.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 68.4 | 39.4 |
| Os05t0461900-00 | Rice | cytosol | 63.2 | 38.83 |
| GSMUA_Achr9P03180_001 | Banana | cytosol, peroxisome, plasma membrane | 65.8 | 38.48 |
| TraesCS3A01G355500.2 | Wheat | cytosol, peroxisome, plasma membrane | 67.1 | 38.37 |
| TraesCS3B01G388400.1 | Wheat | cytosol, peroxisome, plasma membrane | 67.1 | 38.37 |
| HORVU3Hr1G086970.1 | Barley | cytosol, peroxisome, plasma membrane | 66.23 | 38.35 |
| EES03850 | Sorghum | cytosol, peroxisome, plasma membrane | 67.53 | 38.14 |
| TraesCS3D01G349500.1 | Wheat | cytosol, peroxisome, plasma membrane | 66.67 | 38.12 |
| Os01t0837800-01 | Rice | cytosol | 68.4 | 38.07 |
| HORVU1Hr1G071930.2 | Barley | cytosol | 66.23 | 37.87 |
| TraesCS1D01G286000.1 | Wheat | cytosol, peroxisome, plasma membrane | 66.23 | 37.59 |
| TraesCS1B01G296500.1 | Wheat | cytosol, peroxisome, plasma membrane | 66.23 | 37.5 |
| TraesCS1A01G287100.1 | Wheat | cytosol, peroxisome, plasma membrane | 65.8 | 37.35 |
| Zm00001d042939_P002 | Maize | cytosol, peroxisome, plasma membrane | 67.1 | 36.82 |
| CDX88395 | Canola | endoplasmic reticulum, extracellular | 20.35 | 34.31 |
| GSMUA_Achr5P29180_001 | Banana | plasma membrane | 64.94 | 33.19 |
| CDY61375 | Canola | golgi | 29.0 | 31.31 |
| CDX88546 | Canola | cytosol | 48.48 | 27.86 |
| CDX87376 | Canola | cytosol | 48.05 | 27.61 |
| CDX81760 | Canola | plasma membrane | 42.86 | 26.05 |
| CDY35081 | Canola | cytosol, peroxisome, plasma membrane, plastid | 45.02 | 26.0 |
| CDY33342 | Canola | cytosol, peroxisome, plasma membrane, plastid | 45.02 | 26.0 |
| CDY06055 | Canola | cytosol, peroxisome, plasma membrane | 38.53 | 21.71 |
| CDY57242 | Canola | cytosol | 38.1 | 21.46 |
| CDY67929 | Canola | cytosol | 37.23 | 21.23 |
| CDX88969 | Canola | cytosol, peroxisome, plasma membrane | 37.23 | 21.23 |
| CDX71976 | Canola | cytosol, peroxisome, plasma membrane | 37.66 | 21.22 |
| CDY56242 | Canola | cytosol, peroxisome, plasma membrane | 37.66 | 21.22 |
| CDY51006 | Canola | golgi, plasma membrane | 10.82 | 11.47 |
| CDY20436 | Canola | endoplasmic reticulum, extracellular | 1.73 | 3.25 |
| CDY20439 | Canola | endoplasmic reticulum, extracellular | 1.73 | 3.25 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | GO:A0A078G754 | UniProt:A0A078G754 | EnsemblPlants:CDY20438 | ProteinID:CDY20438 |
| ProteinID:CDY20438.1 | InterPro:Cation_efflux | InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006812 | GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0055085 | GO:GO:0098655 | EnsemblPlantsGene:GSBRNA2T00012509001 | InterPro:IPR027469 | PFAM:PF01545 | PANTHER:PTHR43840 |
| PANTHER:PTHR43840:SF5 | SUPFAM:SSF161111 | TMHMM:TMhelix | UniParc:UPI0004EF2514 | SEG:seg | : |
Description
BnaC04g06060DBnaC04g06060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G754]
Coordinates
chrLK032108:+:42570..44105
Molecular Weight (calculated)
25741.9 Da
IEP (calculated)
4.616
GRAVY (calculated)
-0.120
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPDGEEGI LLLEFHGNGD RSWQLNFDDF QVSPEHKEKK SPSKLHNCLG CLGPEDNVAD YYQQQVEMLE GFTEMDELAE RGFVPGMSKE EQDNLAKSET
101: LAIRISNIAN MLLFAAKVYA SVTSGSLAIV ASTLDSLLDL LSGFILWFTA FSMQTPNPYQ YPIGKKRMQP LGILVFASVM ATLGLQIILE SLRTNHKEFS
201: LTKEQRELGG WDHALCYIGQ TASCSLLQIV Q
101: LAIRISNIAN MLLFAAKVYA SVTSGSLAIV ASTLDSLLDL LSGFILWFTA FSMQTPNPYQ YPIGKKRMQP LGILVFASVM ATLGLQIILE SLRTNHKEFS
201: LTKEQRELGG WDHALCYIGQ TASCSLLQIV Q
001: MAATEHRGLS GGDYNVDLLP IDQDDSPPSS WRLSLDTFRL PSSSPLSSGR HNGRTRLSRY LRTPKKERKV SEYYKQQEKL LEGFNEMETI NETGFVSGAP
101: TEEELKKLAK SERLAVHISN AANLVLFVAK VYASVESRSM AVIASTLDSL LDLLSGFILW FTANAMRTPN NFRYPIGKRR MQPVGIIVFA SVMATLGLQV
201: ILESTRLLVS KNGSHMSSTE EKWMIGIMAS ATVVKFLLML YCRSFQNEIV RAYAQDHLFD VITNSVGLAT AVLAVKFYWW IDPSGAILIA LYTISTWART
301: VLENVHSLIG RSAPPDFLAK LTFLIWNHHE KIKHIDTVRA YTFGSHYFVE VDIVLPEDMR LHEAHNIGET LQEKLEQLSE VERAFVHIDF EFTHRPEHKC
401: KV
101: TEEELKKLAK SERLAVHISN AANLVLFVAK VYASVESRSM AVIASTLDSL LDLLSGFILW FTANAMRTPN NFRYPIGKRR MQPVGIIVFA SVMATLGLQV
201: ILESTRLLVS KNGSHMSSTE EKWMIGIMAS ATVVKFLLML YCRSFQNEIV RAYAQDHLFD VITNSVGLAT AVLAVKFYWW IDPSGAILIA LYTISTWART
301: VLENVHSLIG RSAPPDFLAK LTFLIWNHHE KIKHIDTVRA YTFGSHYFVE VDIVLPEDMR LHEAHNIGET LQEKLEQLSE VERAFVHIDF EFTHRPEHKC
401: KV
Arabidopsis Description
Cation efflux family protein [Source:UniProtKB/TrEMBL;Acc:F4IF62]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.