Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G215500.1 | |
| TraesCS4B01G100700.1 | |
| TraesCS4D01G097300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G39450.1 | TraesCS4A01G215500.1 | AT5G51010.1 | 21798944 |
| AT2G39450.1 | TraesCS4B01G100700.1 | AT5G51010.1 | 21798944 |
| AT2G39450.1 | TraesCS4D01G097300.1 | AT5G51010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G296500.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.77 | 98.53 |
| TraesCS1D01G286000.1 | Wheat | cytosol, peroxisome, plasma membrane | 98.53 | 98.53 |
| HORVU1Hr1G071930.2 | Barley | cytosol | 96.07 | 96.78 |
| CDY20436 | Canola | endoplasmic reticulum, extracellular | 25.8 | 85.37 |
| CDY20439 | Canola | endoplasmic reticulum, extracellular | 25.8 | 85.37 |
| TraesCS3A01G355500.2 | Wheat | cytosol, peroxisome, plasma membrane | 84.52 | 85.15 |
| Os05t0461900-00 | Rice | cytosol | 77.4 | 83.78 |
| GSMUA_Achr9P03180_001 | Banana | cytosol, peroxisome, plasma membrane | 79.61 | 82.03 |
| KRH01581 | Soybean | cytosol | 76.17 | 78.28 |
| CDY53587 | Canola | cytosol, nucleus, peroxisome | 74.45 | 77.49 |
| KRH70520 | Soybean | cytosol | 75.18 | 77.27 |
| AT2G39450.1 | Thale cress | cytosol, peroxisome, plasma membrane | 74.69 | 77.16 |
| Solyc05g054730.2.1 | Tomato | cytosol, peroxisome, plasma membrane | 75.92 | 77.06 |
| Bra005039.1-P | Field mustard | cytosol, nucleus, peroxisome | 68.8 | 76.92 |
| Bra017071.1-P | Field mustard | nucleus | 74.2 | 76.65 |
| PGSC0003DMT400060460 | Potato | cytosol, peroxisome, plasma membrane | 75.43 | 76.56 |
| CDY07013 | Canola | cytosol | 74.45 | 76.52 |
| CDX93260 | Canola | cytosol | 74.45 | 76.52 |
| VIT_13s0019g00020.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 74.2 | 75.69 |
| GSMUA_Achr5P29180_001 | Banana | plasma membrane | 77.89 | 70.13 |
| CDY20438 | Canola | cytosol | 37.35 | 65.8 |
| CDY20435 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 38.08 | 57.41 |
| TraesCS3A01G042600.1 | Wheat | cytosol, peroxisome, plasma membrane | 53.81 | 56.01 |
| TraesCS4A01G077100.1 | Wheat | cytosol, peroxisome, plasma membrane | 47.42 | 48.13 |
| TraesCS6A01G322500.1 | Wheat | cytosol | 46.93 | 46.59 |
Protein Annotations
| Gene3D:1.20.1510.10 | MapMan:24.2.9.2.2 | Gene3D:3.30.70.1350 | InterPro:Cation_efflux | InterPro:Cation_efflux_CTD | InterPro:Cation_efflux_CTD_sf |
| InterPro:Cation_efflux_TMD_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006812 |
| GO:GO:0008150 | GO:GO:0008324 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR027469 |
| InterPro:IPR036837 | PFAM:PF01545 | PFAM:PF16916 | PANTHER:PTHR43840 | PANTHER:PTHR43840:SF14 | SUPFAM:SSF160240 |
| SUPFAM:SSF161111 | TIGRFAMs:TIGR01297 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1A01G287100 | EnsemblPlants:TraesCS1A01G287100.1 | SEG:seg |
Description
No Description!
Coordinates
chr1A:+:483920748..483924278
Molecular Weight (calculated)
45575.8 Da
IEP (calculated)
4.696
GRAVY (calculated)
0.045
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGGSAEGE ELFLLRSAEE GDGDGDGLCV GERPWRLNFD GFRRQGPQQE NPPSRGLQDC LGVLAQGPGD VVAEYYQQQL EMLEGFNEMD TLTDHGCLPG
101: ISKEEREKIA RSETLAIRLS NIANMVLFAA KVYASIRSGS LAIIASTLDS LLDLLSGFIL WFTAFSMQTP NPYRYPIGKR RMQPLGILVF ASVMATLGLQ
201: IILESTRSLV SSNGAEFRLT KEQEMWVVNI MLAVTLVKLL LVIYCRSFTN EIVKAYAQDH FFDVITNIIG LVAALLANYF EGWIDPVGAI ILAIYTIRTW
301: SMTVLENVHS LVGQSASPEF LQKLTYLCWN HHKAVRHIDT VRAYTFGSHY FVEVDIVLPC DMPLQEAHDI GEALQEKLES LPEIERAFVH LDYEFTHQPE
401: HARSYDT
101: ISKEEREKIA RSETLAIRLS NIANMVLFAA KVYASIRSGS LAIIASTLDS LLDLLSGFIL WFTAFSMQTP NPYRYPIGKR RMQPLGILVF ASVMATLGLQ
201: IILESTRSLV SSNGAEFRLT KEQEMWVVNI MLAVTLVKLL LVIYCRSFTN EIVKAYAQDH FFDVITNIIG LVAALLANYF EGWIDPVGAI ILAIYTIRTW
301: SMTVLENVHS LVGQSASPEF LQKLTYLCWN HHKAVRHIDT VRAYTFGSHY FVEVDIVLPC DMPLQEAHDI GEALQEKLES LPEIERAFVH LDYEFTHQPE
401: HARSYDT
001: MAATEHRGLS GGDYNVDLLP IDQDDSPPSS WRLSLDTFRL PSSSPLSSGR HNGRTRLSRY LRTPKKERKV SEYYKQQEKL LEGFNEMETI NETGFVSGAP
101: TEEELKKLAK SERLAVHISN AANLVLFVAK VYASVESRSM AVIASTLDSL LDLLSGFILW FTANAMRTPN NFRYPIGKRR MQPVGIIVFA SVMATLGLQV
201: ILESTRLLVS KNGSHMSSTE EKWMIGIMAS ATVVKFLLML YCRSFQNEIV RAYAQDHLFD VITNSVGLAT AVLAVKFYWW IDPSGAILIA LYTISTWART
301: VLENVHSLIG RSAPPDFLAK LTFLIWNHHE KIKHIDTVRA YTFGSHYFVE VDIVLPEDMR LHEAHNIGET LQEKLEQLSE VERAFVHIDF EFTHRPEHKC
401: KV
101: TEEELKKLAK SERLAVHISN AANLVLFVAK VYASVESRSM AVIASTLDSL LDLLSGFILW FTANAMRTPN NFRYPIGKRR MQPVGIIVFA SVMATLGLQV
201: ILESTRLLVS KNGSHMSSTE EKWMIGIMAS ATVVKFLLML YCRSFQNEIV RAYAQDHLFD VITNSVGLAT AVLAVKFYWW IDPSGAILIA LYTISTWART
301: VLENVHSLIG RSAPPDFLAK LTFLIWNHHE KIKHIDTVRA YTFGSHYFVE VDIVLPEDMR LHEAHNIGET LQEKLEQLSE VERAFVHIDF EFTHRPEHKC
401: KV
Arabidopsis Description
Cation efflux family protein [Source:UniProtKB/TrEMBL;Acc:F4IF62]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.