Factsheet for Solyc12g100300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
vacuole 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010945	Potato	cytosol	96.45	91.79
KRG98100	Soybean	plasma membrane	61.93	82.99
GSMUA_Achr10P...	Banana	extracellular, golgi, mitochondrion	20.05	81.44
Solyc01g006150.2.1	Tomato	cytosol	77.92	75.8
Os02t0775100-01	Rice	plasma membrane	38.83	75.0
Solyc03g052990.2.1	Tomato	cytosol, golgi, peroxisome	69.8	74.32
GSMUA_Achr11P...	Banana	golgi, plasma membrane	43.91	73.62
Os03t0226400-01	Rice	vacuole	71.07	70.53
GSMUA_Achr6P11470_001	Banana	cytosol	72.84	70.52
TraesCS4B01G233300.1	Wheat	cytosol, peroxisome, plasma membrane	71.57	70.5
TraesCS4D01G234400.1	Wheat	cytosol, peroxisome, plasma membrane	71.57	70.5
TraesCS4A01G077100.1	Wheat	cytosol, peroxisome, plasma membrane	71.57	70.32
VIT_06s0004g01110.t01	Wine grape	plastid	74.11	70.19
EER92593	Sorghum	cytosol, peroxisome, plasma membrane	70.81	69.92
Zm00001d028344_P002	Maize	cytosol, peroxisome, plasma membrane	70.3	68.91
CDX71976	Canola	cytosol, peroxisome, plasma membrane	70.81	68.05
CDY06055	Canola	cytosol, peroxisome, plasma membrane	70.56	67.8
Bra007377.1-P	Field mustard	cytosol, peroxisome, plasma membrane	70.56	67.8
KRH17220	Soybean	cytosol, peroxisome, plasma membrane	67.01	67.35
AT3G58060.1	Thale cress	cytosol, peroxisome, plasma membrane	69.29	66.42
Bra014588.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.27	66.42
CDX88969	Canola	cytosol, peroxisome, plasma membrane	68.27	66.42
CDY67929	Canola	cytosol	67.77	65.93
CDY56242	Canola	cytosol, peroxisome, plasma membrane	68.27	65.61
Bra003316.1-P	Field mustard	cytosol, peroxisome, plasma membrane	68.02	65.37
CDY57242	Canola	cytosol	67.77	65.12
TraesCS6B01G353300.1	Wheat	cytosol	67.01	64.39
TraesCS6A01G322500.1	Wheat	cytosol	66.5	63.9
KXG31199	Sorghum	peroxisome	67.26	61.06
HORVU4Hr1G065110.3	Barley	cytosol, peroxisome	71.83	60.34
KRH72855	Soybean	cytosol, endoplasmic reticulum, peroxisome	63.45	58.69
TraesCS6D01G302400.1	Wheat	cytosol	66.5	58.22
Zm00001d018242_P001	Maize	cytosol	66.75	58.06
GSMUA_Achr10P...	Banana	cytosol	24.37	55.81
Solyc12g017350.1.1	Tomato	cytosol, peroxisome, plasma membrane	42.64	53.16
HORVU6Hr1G078910.2	Barley	cytosol	57.36	52.93
Solyc05g054730.2.1	Tomato	cytosol, peroxisome, plasma membrane	47.21	46.38
Solyc10g005500.2.1	Tomato	cytosol	48.22	46.12
GSMUA_Achr11P...	Banana	cytosol	30.71	44.49

Protein Annotations

Gene3D:1.20.1510.10	MapMan:24.2.9.2.2	Gene3D:3.30.70.1350	InterPro:Cation_efflux	InterPro:Cation_efflux_CTD	InterPro:Cation_efflux_CTD_sf
InterPro:Cation_efflux_TMD_sf	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006812
GO:GO:0008150	GO:GO:0008324	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0098655
InterPro:IPR027469	InterPro:IPR036837	UniProt:K4DI51	PFAM:PF01545	PFAM:PF16916	PANTHER:PTHR43840
PANTHER:PTHR43840:SF3	SUPFAM:SSF160240	SUPFAM:SSF161111	EnsemblPlantsGene:Solyc12g100300.1	EnsemblPlants:Solyc12g100300.1.1	TIGRFAMs:TIGR01297
TMHMM:TMhelix	UniParc:UPI0002769470	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:67072729..67074592

Molecular Weight (calculated)

44018.5 Da

IEP (calculated)

4.768

GRAVY (calculated)

0.134

Length

394 amino acids

Sequence
(BLAST)

001: MEGELESTKM PLLEGWKLTG SGLRHDFLLR LPDKVIKSCV IDSEASSIIN YNISGLTKGE KEYYERQFET LKSFEEVDIA VTSDEIDEDD LEEEAQHERA
101: MTVSNGANII LLALKIYATV KSGSLAIAAS TLDSLLDLMA GGILWFTHLS MKNINVYKYP IGKLRVQPVG IIVFAAIMAT LGFQVLIQAV EQLVENKPPE
201: KMALNQLAWL YSVMLTATVV KLALWLYCRS SGNDIVRAYA KDHYFDVVTN VVGLIAAVLG DKLYWWIDPV GALILAIYTI TNWSGAVIEN AVSLVGQSAP
301: PEVLQKLTYL VMRHPQVKRV DTVRAYTFGV LYFVEVDIEL PEDLPLKEAH VIGEGLQIKL EKLPQVERAF VHIDFECEHK PEHSVPSRIP NSEP

Best Arabidopsis Sequence Match ( AT3G58060.1 )
(BLAST)

001: MEVNYCPETP LLSSNDHEAI DHKPKLTGMV SSMKSNFFAD LPQKLRSKID PENPLHLDVS KAAGLKEDEK EYYERQLATL KSFEEVESFL ARSDEYTIDE
101: KEEEEDRAER AAQELAMQIS NWANIFLLAL KIYATVKSGS IAIAASTLDS LLDLMAGGIL WFTHLSMKNV NIYKYPIGKL RVQPVGIIIF AAVMATLGFQ
201: VLLVAAEQLI SNEPSEKMNH VQLIWLYSIM LSATAIKLVL WIYCKSSRNH IVRAYAKDHH FDVVTNVLGL VAAVLANAFY WWLDPTGAIL LAIYTIVNWS
301: GTVMENAVSL IGQSAPPEVL QKLTYLVMRQ GGDNIKHVDT VRAYTFGVLY FVEVDIELPE DLPLKEAHAI GESLQIKLEE LPEVERAFVH LDFECHHKPE
401: HSVLSTIPND L

Arabidopsis Description

MTPC3Cation efflux family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VEZ3]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.