CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX78905
CDX84933
CDX89063
CDX93260
CDX97739
CDX98596
CDX99411
CDY01565
CDY03907
CDY07013
CDY15722
CDY20435
CDY20436
CDY20438
CDY20439
CDY27605
CDY30157
CDY41153
CDY48365
CDY53587

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63200.1	CDX84933	AT1G27300.1	21798944
AT3G63200.1	CDY03907	AT1G27300.1	21798944
AT3G63200.1	CDY15722	AT1G27300.1	21798944
AT3G63200.1	CDY27605	AT1G27300.1	21798944
AT3G63200.1	CDX93260	AT2G39450.1	21798944
AT3G63200.1	CDY07013	AT2G39450.1	21798944
AT3G63200.1	CDY20435	AT2G39450.1	21798944
AT3G63200.1	CDY20436	AT2G39450.1	21798944
AT3G63200.1	CDY20438	AT2G39450.1	21798944
AT3G63200.1	CDY20439	AT2G39450.1	21798944
AT3G63200.1	CDY53587	AT2G39450.1	21798944
AT3G63200.1	CDX97739	AT3G16310.1	21798944
AT3G63200.1	CDY30157	AT3G16310.1	21798944
AT3G63200.1	CDX67837	AT3G60600.1	21798944
AT3G63200.1	CDX71796	AT3G60600.1	21798944
AT3G63200.1	CDX89063	AT3G60600.1	21798944
AT3G63200.1	CDY41153	AT3G60600.1	21798944
AT3G63200.1	CDY48365	AT3G60600.1	21798944
AT3G63200.1	CDX78905	AT4G19030.1	21798944
AT3G63200.1	CDX98596	AT4G19030.1	21798944
AT3G63200.1	CDX99411	AT4G19030.1	21798944
AT3G63200.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040428.1-P	Field mustard	cytosol	99.74	99.74
CDX93922	Canola	cytosol	97.93	97.93
CDY56455	Canola	cytosol	87.08	92.08
CDX76689	Canola	cytosol	90.44	90.91
AT3G63200.1	Thale cress	cytosol	88.89	89.58
VIT_07s0151g01130.t01	Wine grape	cytosol	74.94	75.32
KRH32021	Soybean	cytosol	71.06	72.37
KRH71425	Soybean	cytosol	70.8	72.3
Solyc09g065240.2.1	Tomato	cytosol	68.99	69.71
PGSC0003DMT400051868	Potato	cytosol	68.73	69.63
PGSC0003DMT400033524	Potato	cytosol	67.96	69.39
KRG95536	Soybean	cytosol	66.67	67.54
KRH67210	Soybean	cytosol	68.48	66.25
CDX74862	Canola	cytosol	41.09	35.41
CDX67618	Canola	mitochondrion	41.6	34.55
CDY56960	Canola	mitochondrion	43.15	34.36
CDY24974	Canola	cytosol	41.6	33.82
CDX73423	Canola	mitochondrion	42.89	33.81
CDY07512	Canola	mitochondrion	41.34	33.68
CDY07662	Canola	cytosol	41.09	33.4
CDY43526	Canola	nucleus	41.6	32.99
CDX68587	Canola	nucleus	42.12	32.67
CDY44633	Canola	cytosol	40.83	32.51
CDX75619	Canola	cytosol	25.06	23.77
CDX75620	Canola	cytosol, peroxisome, plastid	24.55	23.46
CDX69270	Canola	cytosol, peroxisome, plastid	24.55	23.46
CDY21469	Canola	cytosol, peroxisome, vacuole	24.29	23.1
CDX69269	Canola	cytosol	24.55	22.89
CDX83197	Canola	cytosol	24.03	22.85
CDX72620	Canola	cytosol	24.29	22.82
CDX72619	Canola	cytosol	24.03	22.79
CDY42720	Canola	cytosol	24.03	22.52
CDX75621	Canola	cytosol	23.26	22.11
CDX69271	Canola	cytosol	22.22	21.13
CDY42719	Canola	cytosol	24.29	13.2

Protein Annotations

EnsemblPlants:CDX89181	EnsemblPlantsGene:GSBRNA2T00149343001	Gene3D:3.40.1090.10	GO:A0A078DIY2	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	InterPro:Acyl_Trfase/lysoPLipase	InterPro:IPR002641	InterPro:PNPLA_dom	PANTHER:PTHR32241	PANTHER:PTHR32241:SF5
PFAM:PF01734	PFscan:PS51635	ProteinID:CDX89181	ProteinID:CDX89181.1	SEG:seg	SUPFAM:SSF52151
UniParc:UPI0004EDD128	MapMan:5.7.2.2.4	:	:	:	:

Description

BnaA04g00050D

Coordinates

chrLK031857:+:1607081..1608608

Molecular Weight (calculated)

41713.7 Da

IEP (calculated)

6.764

GRAVY (calculated)

-0.159

Length

387 amino acids

Sequence
(BLAST)

001: MEMDLSKVTL DIFTKLEQKW LSHCDTTRKT RILSIDGGGT TAIAAGASIV HLEDQIRLQT GDPHAQISDF FDIVAGTGIG GILAALLVAD DGSGRPMFTA
101: REAVKFVEEK NSELFEIRHT GVFRRSRRYS GSSMERVLQA AFRREDGKVL TMKDTCKPLL VPCYDLKTSA PFVFSRAGAS ESPSFDFELW KVCRATSATP
201: SMFKPVNVVS VDGKTSCSAV DGGLVMNNPS AAAVTHVLHN KRDFPSVNGV DDLLVLSIGN GSSSTPGRKL QRNGDCSTSC LVDIVLDGVS DTVDQMLGNA
301: FCWNRTDYVR IQVSGLTSGG DGIVGPRKTA EELLKERGVE TAPFGGKRLL TETNGERIEC FVQRLVASSL PPSPCKESAV NPLADGR

Best Arabidopsis Sequence Match ( AT3G63200.1 )
(BLAST)

001: MEMDLSKVTL DIFTKLEQKW LSHCDSSRKT RILSIDGGGT TGIVAAASIL HLEHQIRLQT GDPHAHISDF FDIVAGTGIG GILAALLVAD DGSGRPMFTA
101: RDAVKFVAEK NSELFEIRYT GVFRRNKRYS GKSMERVLET AFRREDGKVL TMKDTCKPLL VPCYDLKTSA PFVFSRAGAS ESPSFDFELW KVCRATSATP
201: SLFKPFSVVS VDGKTSCSAV DGGLVMNNPT AAAVTHVLHN KRDFPSVNGV DDLLVLSLGN GPSTMSSSPG RKLRRNGDYS TSSVVDIVVD GVSDTVDQML
301: GNAFCWNRTD YVRIQANGLT SGGAEELLKE RGVETAPFGV KRILTESNGE RIEGFVQRLV ASGKSSLPPS PCKESAVNPL ADGR

Arabidopsis Description

PLP9Probable inactive patatin-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZQ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.