CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011730.1-P	Field mustard	cytosol	96.14	97.79
CDX75619	Canola	cytosol	95.42	97.06
CDX72619	Canola	cytosol	84.58	86.03
AT4G37070.2	Thale cress	cytosol, peroxisome, plastid	83.13	83.33
CDX69270	Canola	cytosol, peroxisome, plastid	78.31	80.25
CDX75620	Canola	cytosol, peroxisome, plastid	78.07	80.0
AT4G37060.2	Thale cress	cytosol, golgi, plastid	78.8	73.48
VIT_07s0031g00860.t01	Wine grape	cytosol	57.11	58.09
KRH28482	Soybean	cytosol	55.66	57.32
CDX72620	Canola	cytosol	56.87	57.28
PGSC0003DMT400040781	Potato	cytosol	54.7	56.89
CDX75621	Canola	cytosol	55.18	56.27
CDX69271	Canola	cytosol	54.94	56.02
Solyc02g090630.2.1	Tomato	cytosol	53.25	55.95
CDY42720	Canola	cytosol	55.66	55.93
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	53.98	55.72
VIT_07s0031g00870.t01	Wine grape	cytosol	54.46	55.53
CDX83197	Canola	cytosol	50.6	51.6
GSMUA_Achr3P06850_001	Banana	cytosol	50.6	51.47
CDY21469	Canola	cytosol, peroxisome, vacuole	49.88	50.86
CDY42719	Canola	cytosol	83.61	48.74
CDX74862	Canola	cytosol	27.47	25.39
CDY07662	Canola	cytosol	28.43	24.79
CDY24974	Canola	cytosol	28.43	24.79
CDX89181	Canola	cytosol	22.89	24.55
CDX93922	Canola	cytosol	22.65	24.29
CDY44633	Canola	cytosol	28.43	24.28
CDY56455	Canola	cytosol	20.96	23.77
CDX76689	Canola	cytosol	21.93	23.64
CDX67618	Canola	mitochondrion	25.54	22.75
CDY56960	Canola	mitochondrion	26.51	22.63
CDX73423	Canola	mitochondrion	26.75	22.61
CDY43526	Canola	nucleus	25.78	21.93
CDY07512	Canola	mitochondrion	24.82	21.68
CDX68587	Canola	nucleus	26.02	21.64

Protein Annotations

EnsemblPlants:CDX69269	EnsemblPlantsGene:GSBRNA2T00131084001	Gene3D:3.40.1090.10	GO:A0A078BZ66	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	InterPro:Acyl_Trfase/lysoPLipase	InterPro:IPR002641	InterPro:PNPLA_dom	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6
PFAM:PF01734	PFscan:PS51635	ProteinID:CDX69269	ProteinID:CDX69269.1	SEG:seg	SUPFAM:SSF52151
UniParc:UPI0004EDFEE3	MapMan:5.7.2.2.3	:	:	:	:

Description

BnaC01g01840D

Coordinates

chrLK031789:+:3807772..3810242

Molecular Weight (calculated)

45901.6 Da

IEP (calculated)

8.392

GRAVY (calculated)

-0.281

Length

415 amino acids

Sequence
(BLAST)

001: MEDGSSCKRN KPPSWGKLVT ILSLDGGGVR GIIAGVILAY LEKQLQEIDG EDVRLADYFD VVSGTSTGGL MTAMLTVPGE NGRPQLAAKD IVPFYLEHCP
101: KIFPQPEGLA ALLPKLPKLL SGPKYSGKYL RKLLSKLLGE TKLHQTVTNV VIPTFDMKKL QPTIFSSYQA LVDPSLDVKI SDICLGTSAA PTFFPPHYFS
201: NEDSQGKTTE FNLVDGAVTA NNPTLVAMTA VTKQILKNNP DMGKLKPLGY DKFLVISIGT GTSKKEMKYS AKKAAKWGII SWLYNDGSTP ILDMVSDSGR
301: DMIHFHSSVL FKALQSEDKY LRIDDDTLEG DVSSMDLATK SNLENLVKIG EKVLKNRVMH MNIDTGVYEP ITENITNEDQ LKRFAKILSD ERRLRRMRSK
401: TMVQDPSTDL KENNM

Best Arabidopsis Sequence Match ( AT4G37070.2 )
(BLAST)

001: MENKSPSKKN KPPSCGSLVT ILSLDGGGVR GIIAGVILAF LEKQLQELDG EEARLADYFD VIAGTSTGGL VTAMLTVPDE TGRPHFAAKD IVPFYLEHCP
101: KIFPQPTGVL ALLPKLPKLL SGPKYSGKYL RNLLSKLLGE TRLHQTLTNI VIPTFDIKKL QPTIFSSYQL LVDPSLDVKV SDICIGTSAA PTFFPPHYFS
201: NEDSQGNKTE FNLVDGAVTA NNPTLVAMTA VSKQIVKNNP DMGKLKPLGF DRFLVISIGT GSTKREEKYS AKKAAKWGII SWLYDDGSTP ILDITMESSR
301: DMIHYHSSVV FKALQSEDKY LRIDDDTLEG DVSTMDLATK SNLENLQKIG EKMLTNRVMQ MNIDTGVYEP VAENITNDEQ LKRYAKILSD ERKLRRLRSD
401: TMIKDSSNES QEIK

Arabidopsis Description

PLP1Patatin [Source:UniProtKB/TrEMBL;Acc:A0A178UVZ8]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.