Factsheet for VIT_07s0031g00860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g00870.t01	Wine grape	cytosol	76.96	77.15
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	71.32	72.39
VIT_18s0001g10880.t01	Wine grape	cytosol	70.34	70.69
VIT_18s0001g11010.t01	Wine grape	cytosol	69.12	69.46
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	65.44	68.29
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	67.65	67.98
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	67.4	67.73
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	67.16	67.49
PGSC0003DMT400040781	Potato	cytosol	64.95	66.42
Solyc02g090630.2.1	Tomato	cytosol	64.22	66.33
VIT_18s0001g10850.t01	Wine grape	cytosol	66.42	65.62
VIT_18s0001g10910.t01	Wine grape	cytosol	66.18	65.38
VIT_18s0001g10870.t01	Wine grape	cytosol	66.18	65.38
KRH28482	Soybean	cytosol	63.97	64.76
VIT_18s0001g10920.t01	Wine grape	extracellular	67.89	63.53
VIT_00s0567g00050.t01	Wine grape	cytosol	33.09	63.38
VIT_18s0001g10930.t01	Wine grape	cytosol	48.53	63.26
VIT_18s0001g10900.t01	Wine grape	cytosol	30.15	61.19
CDX75621	Canola	cytosol	60.54	60.69
CDX69271	Canola	cytosol	60.29	60.44
CDX72620	Canola	cytosol	61.03	60.44
Bra017799.1-P	Field mustard	cytosol	60.54	59.95
Bra011732.1-P	Field mustard	cytosol	56.13	59.95
CDX75619	Canola	cytosol	58.82	58.82
VIT_00s0567g00060.t01	Wine grape	cytosol	53.92	58.82
Bra011730.1-P	Field mustard	cytosol	58.58	58.58
Bra011731.1-P	Field mustard	cytosol, peroxisome, plastid	58.09	58.52
CDX69270	Canola	cytosol, peroxisome, plastid	58.09	58.52
CDX75620	Canola	cytosol, peroxisome, plastid	58.09	58.52
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	65.93	58.48
CDY42720	Canola	cytosol	59.07	58.35
CDX72619	Canola	cytosol	58.09	58.09
Bra017798.1-P	Field mustard	cytosol	58.09	58.09
AT4G37070.2	Thale cress	cytosol, peroxisome, plastid	58.82	57.97
AT4G37050.1	Thale cress	cytosol	60.78	57.94
CDX69269	Canola	cytosol	58.09	57.11
GSMUA_Achr3P06850_001	Banana	cytosol	56.13	56.13
AT4G37060.2	Thale cress	cytosol, golgi, plastid	55.88	51.24
VIT_00s0567g00040.t01	Wine grape	cytosol	20.1	50.62
AT5G43590.2	Thale cress	mitochondrion	52.94	46.15
VIT_07s0005g01860.t01	Wine grape	cytosol	37.75	40.53
VIT_07s0005g01890.t01	Wine grape	mitochondrion	37.5	40.16
VIT_07s0005g01880.t01	Wine grape	plastid	36.76	39.47
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	37.25	35.85
CDY42719	Canola	cytosol	58.58	33.57
VIT_13s0019g04200.t01	Wine grape	cytosol	28.43	25.33
VIT_10s0092g00150.t01	Wine grape	cytosol	25.25	24.12
VIT_07s0151g01130.t01	Wine grape	cytosol	22.06	23.38

Protein Annotations

EntrezGene:100250815	wikigene:100250815	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CCB47080
ProteinID:CCB47080.1	UniProt:F6H4L6	EMBL:FN595233	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372
InterPro:IPR002641	EntrezGene:LOC100250815	wikigene:LOC100250815	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635
PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	UniParc:UPI00015C9C86	ArrayExpress:VIT_07s0031g00860	EnsemblPlantsGene:VIT_07s0031g00860
EnsemblPlants:VIT_07s0031g00860.t01	RefSeq:XP_002277305	RefSeq:XP_002277305.1	SEG:seg	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:F6H4L6]

Coordinates

chr7:-:16992041..17004769

Molecular Weight (calculated)

44574.4 Da

IEP (calculated)

6.081

GRAVY (calculated)

-0.170

Length

408 amino acids

Sequence
(BLAST)

001: MVGETTSSSL QIKPPARGNL ITILSIDGGG VRGIIPGIIL AFLESELQKL DGEDARLADY FDVIAGTSTG GLITAMLTAP NQENRPLYAA SGIKPFYLEN
101: CPKIFPPRSG IFGTIVNLFK VLTGPKYDGK YLHNLLKNVL GDKRLHQTLT NVVIPTFDIK KLQPTIFSSY QVAINPALDA KLSDICIGTS AAPTYLPAHY
201: FENQDDQENN EEFNLIDGGL AANNPCLVAI SEVTKQVFNK NPDFFPIKPM DYGRFLVISV GTGSAKEEYK YTAKMAAKWG VLGWLYDNGS TLLSPRVSGA
301: SADMVDFHNC VVFEALHSEE NYLRIDDDTL KGTVASVNIA TKKNLDSLVK LGEELLKKPV SRVNLDTGKY EPIKNGGTNE EALIRFAKLL SDEKRLRESS
401: AQQASTSK

Best Arabidopsis Sequence Match ( AT4G37070.2 )
(BLAST)

001: MENKSPSKKN KPPSCGSLVT ILSLDGGGVR GIIAGVILAF LEKQLQELDG EEARLADYFD VIAGTSTGGL VTAMLTVPDE TGRPHFAAKD IVPFYLEHCP
101: KIFPQPTGVL ALLPKLPKLL SGPKYSGKYL RNLLSKLLGE TRLHQTLTNI VIPTFDIKKL QPTIFSSYQL LVDPSLDVKV SDICIGTSAA PTFFPPHYFS
201: NEDSQGNKTE FNLVDGAVTA NNPTLVAMTA VSKQIVKNNP DMGKLKPLGF DRFLVISIGT GSTKREEKYS AKKAAKWGII SWLYDDGSTP ILDITMESSR
301: DMIHYHSSVV FKALQSEDKY LRIDDDTLEG DVSTMDLATK SNLENLQKIG EKMLTNRVMQ MNIDTGVYEP VAENITNDEQ LKRYAKILSD ERKLRRLRSD
401: TMIKDSSNES QEIK

Arabidopsis Description

PLP1Patatin [Source:UniProtKB/TrEMBL;Acc:A0A178UVZ8]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.