Factsheet for VIT_18s0001g10880.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 2
mitochondrion 2
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	90.15	90.15
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	89.66	89.66
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	89.41	89.41
VIT_18s0001g10920.t01	Wine grape	extracellular	95.32	88.76
VIT_18s0001g11010.t01	Wine grape	cytosol	88.67	88.67
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	83.25	86.44
Solyc04g079240.2.1	Tomato	nucleus	71.67	70.63
VIT_07s0031g00860.t01	Wine grape	cytosol	70.69	70.34
KRH51959	Soybean	nucleus	71.67	70.29
Solyc04g079250.2.1	Tomato	cytosol	69.95	70.12
KRH05707	Soybean	cytosol	70.44	69.93
KRH15336	Soybean	cytosol	69.95	69.61
KRH05706	Soybean	cytosol, extracellular, nucleus	64.04	69.15
Solyc04g079260.2.1	Tomato	cytosol	68.97	68.97
VIT_18s0001g10850.t01	Wine grape	cytosol	68.72	67.55
VIT_18s0001g10910.t01	Wine grape	cytosol	68.23	67.07
VIT_18s0001g10870.t01	Wine grape	cytosol	68.23	67.07
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	65.27	65.92
VIT_07s0031g00870.t01	Wine grape	cytosol	65.76	65.6
KRH15337	Soybean	cytosol	25.86	63.64
VIT_18s0001g10930.t01	Wine grape	cytosol	48.03	62.3
VIT_18s0001g10900.t01	Wine grape	cytosol	30.79	62.19
VIT_00s0567g00050.t01	Wine grape	cytosol	32.02	61.03
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	68.23	60.22
VIT_00s0567g00060.t01	Wine grape	cytosol	55.17	59.89
GSMUA_Achr3P06850_001	Banana	cytosol	58.87	58.58
VIT_00s0567g00040.t01	Wine grape	cytosol	20.69	51.85
VIT_07s0005g01880.t01	Wine grape	plastid	40.15	42.89
VIT_07s0005g01890.t01	Wine grape	mitochondrion	39.66	42.26
VIT_07s0005g01860.t01	Wine grape	cytosol	39.41	42.11
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	40.39	38.68
VIT_13s0019g04200.t01	Wine grape	cytosol	30.3	26.86
VIT_07s0151g01130.t01	Wine grape	cytosol	25.37	26.75
VIT_10s0092g00150.t01	Wine grape	cytosol	26.6	25.29

Protein Annotations

EntrezGene:100254055	wikigene:100254055	EntrezGene:100267749	wikigene:100267749	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3
InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CBI19549	ProteinID:CBI19549.3	UniProt:E0CP92	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0004620	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042
GO:GO:0016787	GO:GO:0047372	InterPro:IPR002641	EntrezGene:LOC100254055	wikigene:LOC100254055	EntrezGene:LOC100267749
wikigene:LOC100267749	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6
SUPFAM:SSF52151	UniParc:UPI0001985432	ArrayExpress:VIT_18s0001g10880	EnsemblPlantsGene:VIT_18s0001g10880	EnsemblPlants:VIT_18s0001g10880.t01	RefSeq:XP_002282462
RefSeq:XP_002282462.2	RefSeq:XP_002282523	RefSeq:XP_002282523.1	RefSeq:XP_019071859.1	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:E0CP92]

Coordinates

chr18:-:9163501..9165678

Molecular Weight (calculated)

44851.1 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.215

Length

406 amino acids

Sequence
(BLAST)

001: MEKSLLPQIQ PPTYGNLVTI LSIDGRGIRG IIPATILACL ESQLQELDGD DARIADYFDV IAGTSTGGLV TAMLTAPNDE KRPLFAAKDI KPFYLEHGPK
101: IFPHRRGIFG WIMNIFRSIV GPNYDGKYLH NLIKEKLGRT RLHQTLTSVV IPTFDIKSLQ PSIFSSYEVK RSPSLDAPLA DICIGSSAAP TYFPAYFFKN
201: QDKEGKAREL NLIDGGVAAN NPALVAISQV TKQVFDKNPD FLPIKPMDYG RFLVISIGTG SPKSEQKYNA KMAAKWGVLG WLLHGGSTPL VDVFTQASAD
301: MVDFHISVVF QALHSEDNYL RIQDDTLHGT NATVDVTTKE NLGNLVKIGE RLLKKPVSRV NLETGLSVPV ENCGTNEEAL KRFAKLLSDE KRLRETRSPN
401: PKKNLK

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.