Factsheet for VIT_18s0001g10980.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
vacuole 2
mitochondrion 2
plasma membrane 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g11010.t01	Wine grape	cytosol	96.68	93.1
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	92.84	89.41
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	92.58	89.16
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	91.56	88.18
VIT_18s0001g10880.t01	Wine grape	cytosol	86.44	83.25
VIT_18s0001g10920.t01	Wine grape	extracellular	83.63	75.0
Solyc04g079240.2.1	Tomato	nucleus	71.36	67.72
Solyc04g079250.2.1	Tomato	cytosol	69.82	67.41
KRH51959	Soybean	nucleus	70.59	66.67
Solyc04g079260.2.1	Tomato	cytosol	69.05	66.5
KRH05707	Soybean	cytosol	69.05	66.01
KRH15336	Soybean	cytosol	68.8	65.93
VIT_07s0031g00860.t01	Wine grape	cytosol	68.29	65.44
KRH05706	Soybean	cytosol, extracellular, nucleus	62.4	64.89
VIT_18s0001g10850.t01	Wine grape	cytosol	68.54	64.89
VIT_18s0001g10870.t01	Wine grape	cytosol	67.52	63.92
VIT_18s0001g10910.t01	Wine grape	cytosol	67.26	63.68
VIT_07s0031g00870.t01	Wine grape	cytosol	63.68	61.18
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	62.66	60.95
VIT_00s0567g00050.t01	Wine grape	cytosol	32.74	60.09
KRH15337	Soybean	cytosol	25.06	59.39
VIT_00s0567g00060.t01	Wine grape	cytosol	56.01	58.56
VIT_18s0001g10930.t01	Wine grape	cytosol	46.55	58.15
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	67.52	57.39
GSMUA_Achr3P06850_001	Banana	cytosol	59.08	56.62
VIT_18s0001g10900.t01	Wine grape	cytosol	28.64	55.72
VIT_00s0567g00040.t01	Wine grape	cytosol	20.72	50.0
VIT_07s0005g01880.t01	Wine grape	plastid	40.92	42.11
VIT_07s0005g01890.t01	Wine grape	mitochondrion	40.66	41.73
VIT_07s0005g01860.t01	Wine grape	cytosol	40.15	41.32
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	40.92	37.74
VIT_13s0019g04200.t01	Wine grape	cytosol	30.95	26.42
VIT_07s0151g01130.t01	Wine grape	cytosol	25.58	25.97
VIT_10s0092g00150.t01	Wine grape	cytosol	27.37	25.06

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CCB45865	ProteinID:CCB45865.1	UniProt:F6H015
EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372	InterPro:IPR002641	PFAM:PF01734
InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	UniParc:UPI000210810B
ArrayExpress:VIT_18s0001g10980	EnsemblPlantsGene:VIT_18s0001g10980	EnsemblPlants:VIT_18s0001g10980.t01	:	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:F6H015]

Coordinates

chr18:-:9289407..9305958

Molecular Weight (calculated)

42836.8 Da

IEP (calculated)

6.001

GRAVY (calculated)

-0.065

Length

391 amino acids

Sequence
(BLAST)

001: MEKSLVPQIQ PPTYGSLVTI LSIDGGGIRG IIPATILALL ESQLQAVDGD DARIADYFDV IAGTSTGGLV TAMLTAPDDQ KRPLFAAKEI MPFYLEHGPK
101: IFPETRGIFG WIMSIVRSLI GPKYDGKYLK RIIKEKLGGT RLHETLTSVV IPTFDIKSLQ PTIFSTYEVK RSPCLDAPLA DICIGSSAAP TYFPGHYFKN
201: QDKEGKTQEF NLIDGGVAAN NPALVAITQV TKQVFDKNPD FFPIKPMDFG RFLVISIGTG SPKSEQKYNA KMASKWGVLG WLLHGGSTPL VDVFMQASAD
301: MVDFHISMVF QALHSEDNYL RIQDDTLRGK DASVDVTTEE NLDNLVKIGE RLLKKPVSRV NLETGLSEPV ENGGTNEEAL KRKSLLIACI L

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.