Factsheet for VIT_07s0005g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
plasma membrane 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g01880.t01	Wine grape	plastid	72.41	80.79
VIT_07s0005g01860.t01	Wine grape	cytosol	58.02	64.74
VIT_07s0005g01890.t01	Wine grape	mitochondrion	57.78	64.3
VIT_00s0567g00050.t01	Wine grape	cytosol	22.17	44.13
VIT_18s0001g10930.t01	Wine grape	cytosol	31.37	42.49
VIT_18s0001g10900.t01	Wine grape	cytosol	19.58	41.29
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	37.74	40.92
VIT_18s0001g11010.t01	Wine grape	cytosol	39.15	40.89
VIT_00s0567g00060.t01	Wine grape	cytosol	35.85	40.64
VIT_18s0001g10880.t01	Wine grape	cytosol	38.68	40.39
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	38.21	39.9
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	37.97	39.66
VIT_18s0001g10850.t01	Wine grape	cytosol	38.44	39.47
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	37.5	39.16
VIT_18s0001g10870.t01	Wine grape	cytosol	37.74	38.74
VIT_18s0001g10910.t01	Wine grape	cytosol	37.74	38.74
VIT_07s0031g00860.t01	Wine grape	cytosol	35.85	37.25
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	34.91	36.82
VIT_18s0001g10920.t01	Wine grape	extracellular	37.5	36.47
VIT_07s0031g00870.t01	Wine grape	cytosol	33.96	35.38
VIT_00s0567g00040.t01	Wine grape	cytosol	13.44	35.19
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	37.97	35.0
VIT_13s0019g04200.t01	Wine grape	cytosol	25.71	23.8
VIT_10s0092g00150.t01	Wine grape	cytosol	21.7	21.55
VIT_07s0151g01130.t01	Wine grape	cytosol	18.63	20.52

Protein Annotations

EntrezGene:100260531	wikigene:100260531	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CBI36983
ProteinID:CBI36983.3	UniProt:D7U2L7	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372
InterPro:IPR002641	EntrezGene:LOC100260531	wikigene:LOC100260531	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635
PANTHER:PTHR32176	PANTHER:PTHR32176:SF4	SUPFAM:SSF52151	UniParc:UPI000198398A	ArrayExpress:VIT_07s0005g01840	EnsemblPlantsGene:VIT_07s0005g01840
EnsemblPlants:VIT_07s0005g01840.t01	RefSeq:XP_002271702	RefSeq:XP_002271702.1	SEG:seg	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:D7U2L7]

Coordinates

chr7:+:4304534..4306874

Molecular Weight (calculated)

46586.5 Da

IEP (calculated)

9.689

GRAVY (calculated)

-0.329

Length

424 amino acids

Sequence
(BLAST)

001: MNSTQGPLRR AGGKVITILS IDGGGVRGII PAVILSALEA QLQRIDGPNA RIADYFDVIA GTNTGSIVTA LLTTPYTPPN PPSYASKTDP PSLASQTNAP
101: PNASKANRPR EAKEIPGFYK KHGPSIFRRD KAPVHTSNSD DWWSALVGFL KKQLQDTLDF LLSVRYDNSK LQLKVDEELG KIQLADTLTN VLIPAYDVEH
201: LKLVTFSSHQ DKNKVPKSSV LLRDAVLGSA AAPISFRCHH FEADGKIYNL VDGGMGANNP TLLAIREAIN IFGNRGDNRF LIISLGTGAE GEHHDFVDLD
301: GPVRWILDLK RGTPPLASVL FETSADMVDT YTSIFLGGSQ NSRHRFLRIQ DYTLKPEQLT MDNATDENFK NLTNIANRLL DKPVSFPSSW FGLEPTTTNR
401: GALGRFARDL SRIRVDSAKR LSRR

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.