Factsheet for VIT_07s0031g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
vacuole 2
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g00860.t01	Wine grape	cytosol	72.39	71.32
VIT_07s0031g00870.t01	Wine grape	cytosol	71.64	70.76
VIT_18s0001g10880.t01	Wine grape	cytosol	65.92	65.27
VIT_18s0001g11010.t01	Wine grape	cytosol	64.68	64.04
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	64.43	63.79
Solyc02g090630.2.1	Tomato	cytosol	62.44	63.54
KRH28482	Soybean	cytosol	63.43	63.28
PGSC0003DMT400040781	Potato	cytosol	62.69	63.16
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	63.68	63.05
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	63.43	62.81
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	60.95	62.66
VIT_18s0001g10850.t01	Wine grape	cytosol	63.43	61.74
VIT_18s0001g10910.t01	Wine grape	cytosol	62.44	60.77
VIT_18s0001g10870.t01	Wine grape	cytosol	62.44	60.77
VIT_18s0001g10930.t01	Wine grape	cytosol	47.26	60.7
VIT_00s0567g00050.t01	Wine grape	cytosol	31.84	60.09
VIT_18s0001g10920.t01	Wine grape	extracellular	63.43	58.49
VIT_00s0567g00060.t01	Wine grape	cytosol	53.98	58.02
CDX72620	Canola	cytosol	59.45	58.01
Bra017799.1-P	Field mustard	cytosol	59.45	58.01
GSMUA_Achr3P06850_001	Banana	cytosol	57.71	56.86
CDX69271	Canola	cytosol	57.21	56.51
CDX75621	Canola	cytosol	56.97	56.27
VIT_18s0001g10900.t01	Wine grape	cytosol	27.86	55.72
CDY42720	Canola	cytosol	57.21	55.69
Bra011732.1-P	Field mustard	cytosol	52.74	55.5
Bra011730.1-P	Field mustard	cytosol	55.72	54.9
CDX75619	Canola	cytosol	55.72	54.9
CDX72619	Canola	cytosol	55.47	54.66
Bra011731.1-P	Field mustard	cytosol, peroxisome, plastid	54.98	54.57
CDX69270	Canola	cytosol, peroxisome, plastid	54.98	54.57
CDX75620	Canola	cytosol, peroxisome, plastid	54.98	54.57
AT4G37050.1	Thale cress	cytosol	57.96	54.44
CDX69269	Canola	cytosol	55.72	53.98
Bra017798.1-P	Field mustard	cytosol	54.73	53.92
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	61.69	53.91
AT4G37070.2	Thale cress	cytosol, peroxisome, plastid	55.47	53.86
VIT_00s0567g00040.t01	Wine grape	cytosol	20.65	51.23
AT4G37060.2	Thale cress	cytosol, golgi, plastid	53.98	48.76
AT5G43590.2	Thale cress	mitochondrion	50.99	43.8
VIT_07s0005g01860.t01	Wine grape	cytosol	37.56	39.74
VIT_07s0005g01890.t01	Wine grape	mitochondrion	37.56	39.63
VIT_07s0005g01880.t01	Wine grape	plastid	36.57	38.68
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	36.82	34.91
CDY42719	Canola	cytosol	55.22	31.18
VIT_13s0019g04200.t01	Wine grape	cytosol	27.86	24.45
VIT_07s0151g01130.t01	Wine grape	cytosol	23.13	24.16
VIT_10s0092g00150.t01	Wine grape	cytosol	25.62	24.12

Protein Annotations

EntrezGene:100245674	wikigene:100245674	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CBI21443
ProteinID:CBI21443.3	ncoils:Coil	UniProt:D7SVZ4	EMBL:FN595233	GO:GO:0003674	GO:GO:0003824
GO:GO:0004620	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787
GO:GO:0047372	InterPro:IPR002641	EntrezGene:LOC100245674	wikigene:LOC100245674	PFAM:PF01734	InterPro:PNPLA_dom
PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	TIGR:TC58855	UniParc:UPI0001983A9D
ArrayExpress:VIT_07s0031g00850	EnsemblPlantsGene:VIT_07s0031g00850	EnsemblPlants:VIT_07s0031g00850.t01	unigene:Vvi.23667	RefSeq:XP_002277318	RefSeq:XP_002277318.1
SEG:seg	:	:	:	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:D7SVZ4]

Coordinates

chr7:-:16984194..16986176

Molecular Weight (calculated)

44239.8 Da

IEP (calculated)

5.332

GRAVY (calculated)

-0.311

Length

402 amino acids

Sequence
(BLAST)

001: MSLQIKPPAQ GNLITVLSID GGGIKGIIPG IILDFLESEL QKLDGEDARL ADYFDVVSGT STGGLIATML TAPNENNRPL YAASGIKPFY LENGPKIFPQ
101: KSGILASVEN LFKAFTGPKY DGKYLHSLLK DKLRDTRLHQ TLTNVVIPTF DIKELQPTIF SSYQVTTTPS LDAKLADICI STSAAPTFLP AYYFENPDEK
201: GGKMREFNLT DGGVAANNPT LLAISEVAKQ VSNKNPDFSP FKPMEYDRLL VISLGTGSAK TEHKYNGKMA SKWGLVEWLY NGGNTPLVEC FAQASTDMVD
301: FYISLAFQTH QYEENYLRID DDTLTGTLAS LDVATKENLN NLVQVGEKLL KKPVSRVNLE TGQYEPVKNG GSNEKALRKF AKKLSDERRL RESMAQAAQD
401: LE

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.